BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0034.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4IC73.1 C4IC73_CLOBU Drug resistance transporter, EmrB/QacA sub...   106   6e-22
B1QUV3.1 B1QUV3_CLOBU MDR-type permease                               106   6e-22
C0CKL8.1 C0CKL8_9FIRM Putative uncharacterized protein                104   3e-21
Q03DB0.1 Q03DB0_PEDPA Permease of the major facilitator superfamily    99   1e-19
Q03PK1.1 Q03PK1_LACBA Permease of the major facilitator superfamily    97   4e-19

>C4IC73.1 C4IC73_CLOBU Drug resistance transporter, EmrB/QacA subfamily
          Length = 485

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 68/86 (79%)

Query: 1   MSTVPRTQLGSAGSVNSLVRNVGMVVGITIATSILFNVMSSKAGYRVTDLIPGRPDVFLS 60
           MSTVP+ +LG AGS+N+LVRNVGM  GI +AT++L+  MSSK GYRVTD + GR DVF+ 
Sbjct: 379 MSTVPKNKLGIAGSINALVRNVGMSTGIALATTLLYTQMSSKIGYRVTDFVSGRNDVFIY 438

Query: 61  GMHVVFMTSSAICLVSALLTGWRLFS 86
           GM  V++++ AIC++ A+LT +R++ 
Sbjct: 439 GMKWVYISAGAICMIGAVLTFYRMYK 464


>B1QUV3.1 B1QUV3_CLOBU MDR-type permease
          Length = 485

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 68/86 (79%)

Query: 1   MSTVPRTQLGSAGSVNSLVRNVGMVVGITIATSILFNVMSSKAGYRVTDLIPGRPDVFLS 60
           MSTVP+ +LG AGS+N+LVRNVGM  GI +AT++L+  MSSK GYRVTD + GR DVF+ 
Sbjct: 379 MSTVPKNKLGIAGSINALVRNVGMSTGIALATTLLYTQMSSKIGYRVTDFVSGRNDVFIY 438

Query: 61  GMHVVFMTSSAICLVSALLTGWRLFS 86
           GM  V++++ AIC++ A+LT +R++ 
Sbjct: 439 GMKWVYISAGAICMIGAVLTFYRMYK 464


>C0CKL8.1 C0CKL8_9FIRM Putative uncharacterized protein
          Length = 474

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query: 1   MSTVPRTQLGSAGSVNSLVRNVGMVVGITIATSILFNVMSSKAGYRVTDLIPGRPDVFLS 60
           MST P+++LG  GSVNSLVRN+G  VGIT++T++L++ MS+KAGY+VTD I GR DVF+ 
Sbjct: 384 MSTCPKSKLGIVGSVNSLVRNLGQTVGITLSTTLLYSFMSNKAGYKVTDYIAGRDDVFIY 443

Query: 61  GMHVVFMTSSAICLVSALLTGWRL 84
           GM  V++   AICL+ A LTG RL
Sbjct: 444 GMRHVYLILVAICLIGACLTGGRL 467


>Q03DB0.1 Q03DB0_PEDPA Permease of the major facilitator superfamily
          Length = 480

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 63/84 (75%)

Query: 1   MSTVPRTQLGSAGSVNSLVRNVGMVVGITIATSILFNVMSSKAGYRVTDLIPGRPDVFLS 60
           M +V    LG AG +NSL RN+GMVVGI+ AT++LF+ MS  AG+ VT ++PG P++F++
Sbjct: 392 MGSVEPKDLGIAGGINSLARNLGMVVGISFATTVLFSAMSHIAGHSVTSVVPGHPEIFIA 451

Query: 61  GMHVVFMTSSAICLVSALLTGWRL 84
           GMHV F  S  +CL++ L+TG+RL
Sbjct: 452 GMHVAFTVSFGVCLIATLITGYRL 475


>Q03PK1.1 Q03PK1_LACBA Permease of the major facilitator superfamily
          Length = 478

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 62/86 (72%)

Query: 1   MSTVPRTQLGSAGSVNSLVRNVGMVVGITIATSILFNVMSSKAGYRVTDLIPGRPDVFLS 60
           MS+VP   LG AG VN+L R +GMV+GI++AT++LF  MS  A  +VT  +P  P +F++
Sbjct: 388 MSSVPVKDLGVAGGVNALARELGMVIGISVATTVLFAAMSRAAKRQVTAYLPAHPAIFIT 447

Query: 61  GMHVVFMTSSAICLVSALLTGWRLFS 86
           GMHV F+ S +ICLV+ ++TGWRL  
Sbjct: 448 GMHVAFLVSLSICLVATIITGWRLLK 473


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 426,061,432
Number of extensions: 12457919
Number of successful extensions: 54255
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 54277
Number of HSP's successfully gapped: 89
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)