BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0032.p
         (144 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q8PVU7.1 Q8PVU7_METMA Transcriptional regulator, MarR family           91   3e-17
B1B7Z7.1 B1B7Z7_CLOBO Transcriptional regulator, MarR family           91   3e-17
A6LPF8.1 A6LPF8_CLOB8 Transcriptional regulator, TrmB                  89   1e-16
C3KT18.1 C3KT18_CLOB6 Transcriptional regulator, MarR family           89   2e-16
B1QKJ2.1 B1QKJ2_CLOBO Transcriptional regulator, MarR family           89   2e-16

>Q8PVU7.1 Q8PVU7_METMA Transcriptional regulator, MarR family
          Length = 156

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 4   SNREPIGKLVSQLHRQNQKYLVKELLPYGIGSGGQHIFLKLIVNHPGITQDQMTNEMKFD 63
            ++E IGK +S L+R  Q Y+ K++ PYGIGSG Q  FL  +    GI Q+ +++ +K D
Sbjct: 16  CDKEFIGKAISYLYRYGQIYIGKKIEPYGIGSG-QFPFLMRLYREDGINQESLSDYLKID 74

Query: 64  KATTARSVKKLEEAGYIERRTDPKDRRSSLLYPTPKAVKFAPVLQSI 110
           K TTAR+++KL + GY+ R+ D KDRRS  ++ T K  K  P ++ I
Sbjct: 75  KGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKI 121


>B1B7Z7.1 B1B7Z7_CLOBO Transcriptional regulator, MarR family
          Length = 160

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 3   NSNREPIGKLVSQLHRQNQKYLVKELLPYGIGSGGQHIFLKLIVNHPGITQDQMTNEMKF 62
           N NREP+GK +SQL+R++   L ++   YGIG G Q++FL ++    GI Q++++  +  
Sbjct: 17  NLNREPLGKYISQLYRKSSSVLSRKFSKYGIGYG-QYMFLIVLYKQDGINQEEISERLNI 75

Query: 63  DKATTARSVKKLEEAGYIERRTDPKDRRSSLLYPTPKAVKFAPVLQSIXXXXXXXXXXXX 122
            K TTAR++KKL EAG ++R  D +D+R+  +Y T KA        +I            
Sbjct: 76  YKGTTARAIKKLGEAGLVKRCRDEQDKRAYKVYLTDKAKDIKEEFFNILDEWDTELVAGI 135

Query: 123 XXXEVDQLIALLQKVNKNSA 142
              E+ Q I +L+ + KN +
Sbjct: 136 TEEEILQTIEVLKSICKNQS 155


>A6LPF8.1 A6LPF8_CLOB8 Transcriptional regulator, TrmB
          Length = 147

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 7   EPIGKLVSQLHRQNQKYLVKELLPYGIGSGGQHIFLKLIVNHPGITQDQMTNEMKFDKAT 66
           + IGK + ++HR +  Y  K    +GIG+G Q++FL  +  + GITQ+++T +++ DKAT
Sbjct: 5   QHIGKYIGEIHRSSYMYFGKRFSKFGIGAG-QYLFLLNLYENDGITQEELTKKVRLDKAT 63

Query: 67  TARSVKKLEEAGYIERRTDPKDRRSSLLYPTPKAVKFAPVLQSIXXXXXXXXXXXXXXXE 126
           TAR++KKLE+ GY+ R     D+R+  L  T KA +    + SI               E
Sbjct: 64  TARAIKKLEDEGYVRRIKKESDKRAYRLELTEKAEQIKDDVYSIMNEWESEIRMCFTDEE 123

Query: 127 VDQLIALLQKVNKNS 141
             +L+ LL K++K+S
Sbjct: 124 SQELMNLLNKLSKSS 138


>C3KT18.1 C3KT18_CLOB6 Transcriptional regulator, MarR family
          Length = 145

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 2   LNSNREPIGKLVSQLHRQNQKYLVKELLPYGIGSGGQHIFLKLIVNHPGITQDQMTNEMK 61
           +  N + +G+ +S L+R +  Y+ KEL  YGIGSG Q+IFL  + N+ G  Q++++  + 
Sbjct: 1   MGKNTQCVGRYISMLYRASNCYINKELCKYGIGSG-QYIFLLYVFNNNGCNQEEISTVLN 59

Query: 62  FDKATTARSVKKLEEAGYIERRTDPKDRRSSLLYPTPKAVKFAPVLQSI 110
            DK TTAR+++KLE+ GYI +  D  DRR + +  T K  +   ++  I
Sbjct: 60  IDKGTTARALQKLEKEGYINKEVDKNDRRINHIIITKKGSEIKDIIIKI 108


>B1QKJ2.1 B1QKJ2_CLOBO Transcriptional regulator, MarR family
          Length = 145

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 2   LNSNREPIGKLVSQLHRQNQKYLVKELLPYGIGSGGQHIFLKLIVNHPGITQDQMTNEMK 61
           +  N + +G+ +S L+R +  Y+ KEL  YGIGSG Q+IFL  + N+ G  Q++++  + 
Sbjct: 1   MGKNTQCVGRYISMLYRASNCYINKELCKYGIGSG-QYIFLLYVFNNNGCNQEEISTVLN 59

Query: 62  FDKATTARSVKKLEEAGYIERRTDPKDRRSSLLYPTPKAVKFAPVLQSI 110
            DK TTAR+++KLE+ GYI +  D  DRR + +  T K  +   ++  I
Sbjct: 60  IDKGTTARALQKLEKEGYINKEVDKNDRRINHIIITKKGSEIKDIIIKI 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 699,230,877
Number of extensions: 23182559
Number of successful extensions: 69449
Number of sequences better than 1.0e-05: 218
Number of HSP's gapped: 69560
Number of HSP's successfully gapped: 218
Length of query: 144
Length of database: 3,060,696,203
Length adjustment: 107
Effective length of query: 37
Effective length of database: 2,052,647,598
Effective search space: 75947961126
Effective search space used: 75947961126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)