BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0031.p (178 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PCK8.1 C1PCK8_BACCO YbaK/prolyl-tRNA synthetase associated region 225 1e-57 P71000.1 YWHH_BACSU Uncharacterized protein ywhH 224 2e-57 Q18AQ2.1 Q18AQ2_CLOD6 Putative regulatory protein 218 2e-55 B0A859.1 B0A859_9CLOT Putative uncharacterized protein 213 5e-54 B6G1C7.1 B6G1C7_9CLOT Putative uncharacterized protein 205 1e-51 >C1PCK8.1 C1PCK8_BACCO YbaK/prolyl-tRNA synthetase associated region Length = 176 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 108/168 (64%), Positives = 134/168 (79%), Gaps = 2/168 (1%) Query: 11 LSIANVKEHFRRVGREQDILEFATSSATVEMAAATIGVIPARIAKTLSFRGT-DESAILV 69 +S+ +VK +F++ RE+D+L +SSATVE+AA + P RIAKTL+FRGT +E A+LV Sbjct: 1 MSLEDVKAYFKQWDREEDVLVLPSSSATVELAAEALNTEPERIAKTLAFRGTGEEEALLV 60 Query: 70 VAAGDAKVDNKKFRESFGLKARMLSPEEVLEQTGHEIGGVCPFGLARDLEVYLDVSMKRF 129 V AGDAK+DNKKFR++FG KARMLSPEE LE TGH +GGVCPFGL +DL VY+DVS+KRF Sbjct: 61 VTAGDAKIDNKKFRQTFGGKARMLSPEETLEHTGHAVGGVCPFGLKKDLPVYMDVSLKRF 120 Query: 130 TTLFPACGSTNSAIELNCDELAVYSGAKDWVDVCKGWNEPLETGEGSA 177 TT+FPACGS NSAIEL C+EL Y A+ WVDVCKGW EP E + +A Sbjct: 121 TTVFPACGSGNSAIELTCEELYTYGKAEKWVDVCKGW-EPAEDYQHAA 167 >P71000.1 YWHH_BACSU Uncharacterized protein ywhH Length = 157 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/156 (68%), Positives = 126/156 (80%) Query: 11 LSIANVKEHFRRVGREQDILEFATSSATVEMAAATIGVIPARIAKTLSFRGTDESAILVV 70 +S+ +V+ HF + RE D+ EF TSSATVE AA TIGV +RIAK+LSFRG + IL+V Sbjct: 1 MSLKSVRTHFTQWNRENDVTEFETSSATVEQAAETIGVSLSRIAKSLSFRGEGDQVILIV 60 Query: 71 AAGDAKVDNKKFRESFGLKARMLSPEEVLEQTGHEIGGVCPFGLARDLEVYLDVSMKRFT 130 AAGDAK+DNKK R++FG KARMLSP EVLEQTGHEIGGVCPFGLA D EVYLDVS+KRF Sbjct: 61 AAGDAKIDNKKSRQTFGFKARMLSPNEVLEQTGHEIGGVCPFGLAHDPEVYLDVSLKRFQ 120 Query: 131 TLFPACGSTNSAIELNCDELAVYSGAKDWVDVCKGW 166 T+FPACGS NSAIEL EL+ +S +K W+DVCK W Sbjct: 121 TVFPACGSRNSAIELTPKELSEFSFSKVWIDVCKDW 156 >Q18AQ2.1 Q18AQ2_CLOD6 Putative regulatory protein Length = 155 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 102/156 (65%), Positives = 126/156 (80%), Gaps = 1/156 (0%) Query: 11 LSIANVKEHFRRVGREQDILEFATSSATVEMAAATIGVIPARIAKTLSFRGTDESAILVV 70 +SI+NV+E+F++ G+E ILEF SSATVE+AA GVIPARIAKTLSF+ D+ AIL+V Sbjct: 1 MSISNVREYFKQFGKEDSILEFEQSSATVELAAEAAGVIPARIAKTLSFKIGDD-AILIV 59 Query: 71 AAGDAKVDNKKFRESFGLKARMLSPEEVLEQTGHEIGGVCPFGLARDLEVYLDVSMKRFT 130 AGDAK+DNKK++ F KA+ML+PEEVLE TGH IGGVCPFGL ++VYLD SMKRF Sbjct: 60 TAGDAKIDNKKYKAEFNCKAKMLTPEEVLEFTGHAIGGVCPFGLKNSIKVYLDDSMKRFD 119 Query: 131 TLFPACGSTNSAIELNCDELAVYSGAKDWVDVCKGW 166 T+FPACGS+NSAIEL C+E+ +S + WVDVCK W Sbjct: 120 TVFPACGSSNSAIELTCEEMEKFSKCEKWVDVCKNW 155 >B0A859.1 B0A859_9CLOT Putative uncharacterized protein Length = 164 Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 101/162 (62%), Positives = 127/162 (78%), Gaps = 2/162 (1%) Query: 11 LSIANVKEHFRRVGREQDILEFATSSATVEMAAATIGVIPARIAKTLSFRG-TDESAILV 69 +SI VKE+F GRE DILEF SSATVE+AA VIPARIAKTLSF+ ++AIL+ Sbjct: 1 MSIEKVKEYFAEYGREDDILEFDQSSATVELAAQAANVIPARIAKTLSFKNKAGDNAILI 60 Query: 70 VAAGDAKVDNKKFRESFGLKARMLSPEEVLEQTGHEIGGVCPFGLARD-LEVYLDVSMKR 128 V AGDAK+DNKK++ F KA+ML+P+EV+E GH IGGVCPF +A D ++V+LDVSMKR Sbjct: 61 VVAGDAKIDNKKYKAEFATKAKMLNPDEVVEYIGHAIGGVCPFAIANDGVKVFLDVSMKR 120 Query: 129 FTTLFPACGSTNSAIELNCDELAVYSGAKDWVDVCKGWNEPL 170 F+T+FPACGS+NSAIEL CDE+ YS + WVDVCK +++ L Sbjct: 121 FSTVFPACGSSNSAIELTCDEMEKYSHCEKWVDVCKAYDDTL 162 >B6G1C7.1 B6G1C7_9CLOT Putative uncharacterized protein Length = 163 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/161 (63%), Positives = 122/161 (75%), Gaps = 3/161 (1%) Query: 11 LSIANVKEHFRRVGREQDILEFATSSATVEMAAATIGVIPARIAKTLSFRGT-DESAILV 69 +SI V++H + GRE D++EF SSATVE+AA T+G+IPAR+AKTLSFRG D AI+V Sbjct: 1 MSIEKVRKHMEQFGRENDVMEFDESSATVELAAETVGIIPARVAKTLSFRGKEDGEAIIV 60 Query: 70 VAAGDAKVDNKKFRESFGLKARMLSPEEVLEQTGHEIGGVCPFGLAR-DLEVYLDVSMKR 128 VAAGD K+DNKKFR F KARMLS EE +E TGH +GGVCPF L +++VYLD S+KR Sbjct: 61 VAAGDTKIDNKKFRHEFSCKARMLSAEEAVEFTGHMVGGVCPFALENENVKVYLDESLKR 120 Query: 129 FTTLFPACGSTNSAIELNCDELAVYSGA-KDWVDVCKGWNE 168 F T+FPA GS NSAIEL DEL YS WVDVCKGWNE Sbjct: 121 FDTVFPAAGSGNSAIELTNDELEKYSSNFVKWVDVCKGWNE 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 972,697,704 Number of extensions: 34670752 Number of successful extensions: 94977 Number of sequences better than 1.0e-05: 390 Number of HSP's gapped: 95172 Number of HSP's successfully gapped: 390 Length of query: 178 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 51 Effective length of database: 1,864,227,298 Effective search space: 95075592198 Effective search space used: 95075592198 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)