BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0026.p (617 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2AXH9.1 C2AXH9_9MICO Carbohydrate ABC transporter substrate-bin... 366 4e-99 B8I622.1 B8I622_CLOCE Extracellular solute-binding protein family 1 348 8e-94 B1S957.1 B1S957_9BIFI Putative uncharacterized protein 340 2e-91 B1S933.1 B1S933_9BIFI Putative uncharacterized protein 330 2e-88 A9KQL0.1 A9KQL0_CLOPH Putative uncharacterized protein 288 1e-75 >C2AXH9.1 C2AXH9_9MICO Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 587 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 216/553 (39%), Positives = 317/553 (57%), Gaps = 23/553 (4%) Query: 69 SKPLKLTVFSTTANYAGPQTGWFAKIIKDKFNIELDIVASNLTGG-DTKISAMMASGNLG 127 S P+ + VF ANY G Q+GWF K++KDKFN+EL+I+A N+ GG DT + +A G+LG Sbjct: 47 SDPITIDVFDGLANYQGIQSGWFGKLVKDKFNMELNIIAPNVAGGGDTLYNTRVAGGDLG 106 Query: 128 DIIVFGDDKNHYPNAIKGKLLLDWTQDGLLDKYGA-DLTKQFPKAVEKAKVAFGGGSAVY 186 D+I+ D I G LLLD ++ YG+ + Q+ AV++ G +Y Sbjct: 107 DLIIT-DKGEKMDELIAGGLLLDVSK-----YYGSMESVSQYDAAVQRLN---DGKDGIY 157 Query: 187 GIGNGVAT-NPSGPSEGKDMTWGPDLRWDLYQQIGAPEISTIEDYLPVLKKMQELEPKNE 245 G+ V+T P+ PSEG D T+G LRWD Y G PEI T+ED LP+LK+MQ+ P + Sbjct: 158 GLPTQVSTLPPTAPSEGIDPTFGAYLRWDYYADAGYPEIGTLEDLLPILKEMQDAHPTAD 217 Query: 246 QGKKTYAFSLWSDWDGNYKMTLAKQFANMMGYDEIPDTALYVKADEEKYYDFISEDSWYM 305 G TY SL+ DWDGN M + KQ A + G+DE+ + KAD +Y I DS Y+ Sbjct: 218 NGGPTYGLSLFKDWDGN-MMVMGKQPACLYGFDEM--GFVLAKADGSEYQSIIDSDSAYV 274 Query: 306 KSLKLYYEANQLGLLDPDSLTQKFDDVVAKYKDGRLLFSWFPWLGAANYNTPERTAEGKG 365 +SL+LY++ANQLG+LDP+S TQ +D + AKY++G++L SW+PWLG + YNT GKG Sbjct: 275 RSLQLYFDANQLGILDPESTTQNYDTMFAKYQNGQVLLSWWPWLGQSAYNTTANLEAGKG 334 Query: 366 FALVPFKNELMYSTGFNVYXXXXXXXXXXXXXEPARIMEFLNWMYTPEGAMISAGSGTAV 425 F +VP ++ ++S G VY +P RI F++W+Y+ EG ++++G+ T Sbjct: 335 FEMVPLADQEIFSYGAEVYGGKQVLAIGSHAEDPDRIAAFVDWLYSREG-VLASGNQTMG 393 Query: 426 PNGPQGLTWDIDSSGKPVVTDFGWKAYADQQNTKVPDEXXXXXXXXXSNQMNFSFVVPAM 485 GP+GLTW++ +P +TDFG KA + VP E + +N + V+P Sbjct: 394 AAGPEGLTWEL-VGDQPELTDFG-KAAILGGDGDVPAEWGGGKYADGVSALNVTTVLPID 451 Query: 486 VNPQTSEPYDHNLWTTSLERNPTKLDSDWRAKMGVLTAK-EYFEKNNLLAVAP-QGFTGK 543 +P+T Y++ W + E T L DW A M T+ +Y KN+ + VAP GFT Sbjct: 452 TDPKTGYEYNYKYWPSVQEITGTALTDDWSAHMDDATSTMDYLVKNDQVLVAPGSGFTTP 511 Query: 544 EPLTMDKTLEQKNKQIGTVIQQISWKMVFAKNQVEYDKLNKEMHDKVNGLGYADVMDFSV 603 +E Q+ + + SWKMV+AK+Q E+D L ++ GLGYA V++ + Sbjct: 512 AD---SSEIETIRNQVKASVVEYSWKMVYAKDQAEFDSLLAQLQSTAEGLGYAKVLEVDM 568 Query: 604 KKAAELFEARKSV 616 A EAR++V Sbjct: 569 ANAEAQNEAREAV 581 >B8I622.1 B8I622_CLOCE Extracellular solute-binding protein family 1 Length = 588 Score = 348 bits (893), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 202/548 (36%), Positives = 312/548 (56%), Gaps = 22/548 (4%) Query: 72 LKLTVFSTTANYAGPQTGWFAKIIKDKFNIELDIVASNLTG-GDTKISAMMASGNLGDII 130 + L V++ T N+ G Q GWF K+IKDKFN++L+I+++ G D ASG+LGDI+ Sbjct: 51 VTLDVYTMTGNFQGEQIGWFGKVIKDKFNLKLNIISAQTDGNADQSFQTRSASGDLGDIV 110 Query: 131 VFGDDKNHYPNAIKGKLLLDWTQDGLLDKYGADLTKQFPKAVEKAKVAFGGGSAVYGIGN 190 V+G + +++K LL+ + + LL K+G ++ K F A+++ +G Y I N Sbjct: 111 VYGAIDTKFTDSLKAGLLMKLSDNDLLAKHGDNIVKNFSGAIKRISAKYGD----YAIPN 166 Query: 191 GVAT-NPSGPSEGKDMTWGPDLRWDLYQQIGAPEISTIEDYLPVLKKMQELEPKNEQGKK 249 V+ +P PSE D+T+G R+D YQ+IG+P++++ +D P+LK M + P N G+K Sbjct: 167 NVSNESPITPSEDSDLTFGVYTRYDYYQEIGSPKLNSFDDVYPMLKAMAKKHPTNSNGQK 226 Query: 250 TYAFSLWSDWDGNYKMTLAKQFANMMGYDEIPDTALYVKAD-EEKYYDFISEDSWYMKSL 308 YAFSL+ DWDG M K A + GY+E P + + +Y I D +Y+K+L Sbjct: 227 QYAFSLFKDWDG-CMMMFGKMIAELYGYEEAPFGGFLLTNNMATEYQSIIDPDGYYVKAL 285 Query: 309 KLYYEANQLGLLDPDSLTQKFDDVVAKYKDGRLLFSWFPWLGAANYNTPERTAEGKGFAL 368 K+Y +A + GLLDPDS+ Q +DD+ KY +G++L+S F WLG N+N + ++G GFAL Sbjct: 286 KVYNQAYRDGLLDPDSINQTWDDITKKYANGQVLYSQFSWLGPNNFNNADNISKGVGFAL 345 Query: 369 VPFKNELMYSTGFNVYXXXXXXXXXXXXXEPARIMEFLNWMYTPEGAMISAGSGTAVPNG 428 VP +E ++S GF P R M+FLNW Y+ EG MI + NG Sbjct: 346 VPIADEKIWSNGFTPNGSTYLVALGKSCKNPERAMDFLNWYYSSEGEMI-------IKNG 398 Query: 429 PQGLTWDIDSSGKPVVTDFGWKAYADQQNTKVPDEXXXXXXXXXSNQMNFSFVVPAMVNP 488 P+GL W I+ +GKP +TDFG K +V E ++ F + +NP Sbjct: 399 PEGLAWRIE-NGKPTLTDFGRKCMPSIA-VEVSSEFGGSDWQTGECKVGFDGLAANSINP 456 Query: 489 QTSEPYDHNLWTTSLERNPTKLDSDWRAKM-GVLTAKEYFEKNNLLAVAP-QGFTGKEPL 546 T EPY + LW+++L N + L +W A M L+ K++ KNN ++V+P + G Sbjct: 457 NTKEPYYYKLWSSTLSSNTSTLQKNWSAAMDDALSTKDWLMKNNHVSVSPGTDYVGP--- 513 Query: 547 TMDKTLEQKNKQIGTVIQQISWKMVFAKNQVEYDKLNKEMHDKVNGLGYADVMDFSVKKA 606 T+ ++ + I+ SWKMV+AKN E++ L K+M +KV G GY V++++ ++ Sbjct: 514 TLPSDIQSTQDVVKMDIRDYSWKMVYAKNDSEFNSLLKQMTEKVKGEGYDTVVEWNKQQL 573 Query: 607 AELFEARK 614 AEL ARK Sbjct: 574 AELSAARK 581 >B1S957.1 B1S957_9BIFI Putative uncharacterized protein Length = 567 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 201/554 (36%), Positives = 312/554 (56%), Gaps = 14/554 (2%) Query: 67 DHSKPLKLTVFSTTANYAGPQTGWFAKIIKDKFNIELDIVASNLTGG-DTKISAMMASGN 125 D + + + VF ANY G Q GWFAK+IKDKFNI+L+IVA N+ GG +T A+GN Sbjct: 17 DDNSLMTVEVFDQLANYQGEQKGWFAKVIKDKFNIKLNIVAPNVAGGGNTLFDTRAAAGN 76 Query: 126 LGDIIVFGDDKNHYPNAIKGKLLLDWTQDGLLDKYGADLTKQFPKAVEKAKVAFGGGSAV 185 LGDI++ G +K KL+ D + KY K + A+++ S + Sbjct: 77 LGDIVIIGSGSGQAEKVVKSKLVTDLSSYIKNTKY----LKTYQGAIDQLTKDANQESGM 132 Query: 186 YGIGNGVAT-NPSGPSEGKDMTWGPDLRWDLYQQIGAPEISTIEDYLPVLKKMQELEPKN 244 +GI V++ +P+ SEG + T+GP +RWD Y++IG P+++T+ED LPVLK+MQ+ + Sbjct: 133 WGIPTSVSSLSPTESSEGVEPTFGPFVRWDYYKEIGYPKVATLEDLLPVLKQMQDKAREE 192 Query: 245 EQGKKTYAFSLWSDWDGNYKMTLAKQFANMMGYDEIPDTALYVKADEEKYYDFISEDSWY 304 YA SL+ DWD + M Q GY E + AD I E+ Y Sbjct: 193 TGSDDVYALSLFKDWD-DQAMQNGFQLPAFYGYAEGTGYVM-SNADGTDAQSLIDENGVY 250 Query: 305 MKSLKLYYEANQLGLLDPDSLTQKFDDVVAKYKDGRLLFSWFPWLGAANYNTPERTAEGK 364 +++LK Y +A Q+GL+DP+S TQ +D + +KYK+G++LFS++PWLG A YNT +GK Sbjct: 251 VRALKFYNKAEQMGLVDPESTTQNYDTMYSKYKEGKILFSFWPWLGQAAYNTDAHKKDGK 310 Query: 365 GFALVPFKNELMYSTGFNVYXXXXXXXXXXXXXEPARIMEFLNWMYTPEGAMISAGSGTA 424 GF ++ + + S G R+++F++W+Y+PEG + +AGS T Sbjct: 311 GFMMLSIDDMKIASKGAQPNGTTTFIGVGEKAKNKERLVKFIDWLYSPEG-IQAAGSQTN 369 Query: 425 VPNGPQGLTWDIDSSGKPVVTDFGWKAYADQQNTKVPDEXXXXXXXXXSNQMNFSFVVPA 484 G +GLTWDI GKPV+TDFG KA ++ VP+E ++Q+N S V+ Sbjct: 370 GAAGLKGLTWDI-KDGKPVLTDFGVKAMGG-ESVNVPEEYGGGGYSDGASQLNVSTVLNK 427 Query: 485 MVNPQTSEPYDHNLWTTSLERNPTKLDSDWRAKM-GVLTAKEYFEKNNLLAVAPQGFTGK 543 ++P+T+ PY++ +W + L + T LD DW+ M G T EY E++ LAV P G + Sbjct: 428 DIDPRTNAPYNYQMWDSELAKRDTALDKDWQEHMGGARTTMEYLEQSGKLAVIP-GASYT 486 Query: 544 EPLTMDKTLEQKNKQIGTVIQQISWKMVFAKNQVEYDKLNKEMHDKVNGLGYADVMDFSV 603 P D + Q+ T + W+ VF+K+ E++ + +M +V+GLGY V D + Sbjct: 487 TP-DEDSVISTTRGQLKTAVVNACWQAVFSKSDDEFNSIWSKMQKEVDGLGYKKVYDVDM 545 Query: 604 KKAAELFEARKSVK 617 K ++F+AR++++ Sbjct: 546 KNTKDMFKARQAIE 559 >B1S933.1 B1S933_9BIFI Putative uncharacterized protein Length = 595 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 207/557 (37%), Positives = 297/557 (53%), Gaps = 22/557 (3%) Query: 67 DHSKPLKLTVFSTTANYAGPQTGWFAKIIKDKFNIELDIVASNLTGG-DTKISAMMASGN 125 D + + + VF ANY G Q GWFAKIIKDKFNI+L+IVA N+ GG T A+GN Sbjct: 36 DDNSLMTVEVFDGLANYQGEQKGWFAKIIKDKFNIKLNIVAPNVAGGGSTLFDTRAAAGN 95 Query: 126 LGDIIVFGDDKNHYPNAIKGKLLLDWTQDGLLDKY--GADLTKQFPKAVEKAKVAFGGGS 183 LGDI+++G D +K L+ D T Y G ++ A + G S Sbjct: 96 LGDIVIYGYDTGKGAKLVKSGLIEDMT------PYLKGMKYINKYKDATDYVNEQIGQKS 149 Query: 184 AVYGIGNGVA--TNPSGPSEGKDMTWGPDLRWDLYQQIGAPEISTIEDYLPVLKKMQELE 241 V+G+ V P PSEG + T+GP LRWDLY++IG PEI T+ED +PVLK+MQ+ Sbjct: 150 GVWGVPASVVDTLTPDQPSEGLEPTFGPYLRWDLYKEIGYPEIDTLEDLIPVLKQMQDKA 209 Query: 242 PKNEQGKKTYAFSLWSDWDGNYKMTLAKQFANMMGYDEIPDTALYVKADEEKYYDFISED 301 + YA SL+ DWDGN M AKQ G+DE+ + K D + E Sbjct: 210 REESGSDDIYAMSLFKDWDGNM-MNNAKQPTCFYGFDEV--GFVLAKGDGSDFESITKEG 266 Query: 302 SWYMKSLKLYYEANQLGLLDPDSLTQKFDDVVAKYKDGRLLFSWFPWLGAANYNTPERTA 361 Y + +K + AN+ G++DP+S TQ +D + +KYK+G++LFS++PWLG A +NT A Sbjct: 267 GIYERVIKFFNAANRAGIVDPESTTQNYDTMNSKYKNGKVLFSFWPWLGQAAHNTNANKA 326 Query: 362 EGKGFALVPFKNELMYSTGFNVYXXXXXXXXXXXXXEPARIMEFLNWMYTPEGAMISAGS 421 EGKGF L P K+ ++S G R+++F+NW+Y+PEG S+ Sbjct: 327 EGKGFMLAPLKDMKIFSYGAAPRGDKTMIALGSKAKNKQRLVKFINWLYSPEGVYASSNQ 386 Query: 422 GTAVPNGPQGLTWDIDSSGKPVVTDFGWKAYADQQNTKVPDEXXXXXXXXXSNQMNFSFV 481 T GP+GL W+I GKPV+T+FG A ++ VP+E + +NF+ V Sbjct: 387 -TGGSAGPKGLNWEI-KDGKPVLTEFG-SAVLSGESKNVPEEWGGGSYSDGISALNFTTV 443 Query: 482 VPAMVNPQTSEPYDHNLWTTSLER-NPTKLDSDWRAKMGVLTAKEYFEKNNLLAV-APQG 539 ++P T Y+ +W + +E+ N L+ DW+ MG T EY E N++L V A Sbjct: 444 TVNDIDPDTGYTYNPVMWPSEIEKANQNPLNKDWQEHMGASTTMEYLENNDMLLVGAGSS 503 Query: 540 FTGKEPLTMDKTLEQKNKQIGTVIQQISWKMVFAKNQVEYDKLNKEMHDKVNGLGYADVM 599 + E + TL I T I SWK FA ++ E +K+ EM VNGL V+ Sbjct: 504 YVQPEENSQISTLR---GSIKTEIVNSSWKASFASSESECEKIFSEMIKTVNGLDIDSVL 560 Query: 600 DFSVKKAAELFEARKSV 616 +K A + +ARK++ Sbjct: 561 KVDMKNAKDQDKARKNI 577 >A9KQL0.1 A9KQL0_CLOPH Putative uncharacterized protein Length = 595 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 185/538 (34%), Positives = 272/538 (50%), Gaps = 27/538 (5%) Query: 72 LKLTVFSTTANYAGPQTGWFAKIIKDKFNIELDIVASNLTGGDTKISAMMASGNLGDIIV 131 L L V+S ANY G Q GWFA +I +KFN++L+I+ GD M SG+LGD++V Sbjct: 73 LTLNVYSQLANYEGIQIGWFADVILEKFNVKLNIINE----GDGVFPTRMESGDLGDLVV 128 Query: 132 FGDDKNHYPNAIKGKLLLDWTQDGLLDKYGADLTKQFPKAVEKAKVAFGGGSAVYGIGNG 191 FG+D + Y A+ +L DW + L+ YG + K A+EK K GG + YG G Sbjct: 129 FGNDGDQYKQAVDKGMLFDWEDEDLVKNYGPSIYKNMSAALEKNKKVSGGNT--YGFGYN 186 Query: 192 VATNPSGPSEGKDMTWGPDLRWDLYQQIGAPEISTIEDYLPVLKKMQELEPKNEQGKKTY 251 VA SG + G D + PDLRWDLYQQIG+P I+T+EDY+ VLKKM+E+ P ++ GK+TY Sbjct: 187 VAL--SGGNFG-DFDYHPDLRWDLYQQIGSPAINTLEDYVDVLKKMKEVCPTSDSGKETY 243 Query: 252 AFSLWSDWDGNYKMTLAKQFANMMGYDEIPDTALYVKADEEKYYDFISEDSWYMKSLKLY 311 SL+ DWDGN M + N G DE + AD+ + D ++++ +Y++ LK Y Sbjct: 244 GASLFKDWDGNMAMFVKATATNFFGVDEF--HFGFYNADDGSFQDCLADNGYYLRCLKFY 301 Query: 312 YEANQLGLLDPDSLTQKFDDVVAKYKDGRLLFSWFPWLGAANYNTPERTAEGKGFALVPF 371 Q GLLDPDS+TQ + + Y+DG F F W+ A +NT E AEGK V Sbjct: 302 NTLFQNGLLDPDSMTQGYSGCMEDYQDGGAFFCIFGWMAAPQFNTDEHIAEGKKMLPVAA 361 Query: 372 KNELMYSTGFNVYXXXXXXXXXXXXXEPARIMEFLNWMYTPEGAMISAGSGTAVPNGPQG 431 K++ G N P M LNW+ TPEG + S GP+ Sbjct: 362 KDQDTLVYGLNTNGGNRIWSIGANTKYPELCMAILNWLCTPEGFITS-------EYGPKD 414 Query: 432 LTWDIDSSGKPVVTDFGWKAYADQQNTK-VPDEXXXXXXXXXSNQMNFSFVVPAM--VNP 488 + W+ G +T+FG + +Q+ T P N + + + VN Sbjct: 415 ICWEYLPDGSVDLTEFGLQCRINQKTTMPAPYTGYWEDGCQQINNLTWDRNTEILGGVNG 474 Query: 489 QTSEPYDHNLWTTSLERNPTKLDSDWRAKMGVLTAKEYFEKNNLLAVAPQGFTGKEPLTM 548 QT Y++ W L + +D WR + +EY K N +VA + T + + Sbjct: 475 QT---YNYLYWPRYLNLPVSDVDQSWRDATKSDSIREYLSKFN-YSVA-KAHTYSDSVRS 529 Query: 549 DKTLEQKNKQIGTVIQQISWKMVFAKNQVEYDKLNKEMHDKVNGLGYADVMDFSVKKA 606 D+ L+ Q+ I+ SWK ++AK E+D++ +M + G+ D+S +A Sbjct: 530 DE-LDTIWNQVKECIKNGSWKAIYAKTDAEFDEIVNQMKTEAYNYGFQQCADWSANEA 586 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,535,872,253 Number of extensions: 155575826 Number of successful extensions: 276093 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 276053 Number of HSP's successfully gapped: 20 Length of query: 617 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 475 Effective length of database: 1,722,912,073 Effective search space: 818383234675 Effective search space used: 818383234675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)