BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0024.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I620.1 B8I620_CLOCE Binding-protein-dependent transport system... 342 4e-92 B1S931.1 B1S931_9BIFI Putative uncharacterized protein 328 4e-88 A9KQK8.1 A9KQK8_CLOPH Binding-protein-dependent transport system... 324 6e-87 C2AXD0.1 C2AXD0_9MICO Carbohydrate ABC transporter membrane prot... 290 9e-77 B5YAV4.1 B5YAV4_DICT6 Transmembrane lipoprotein 224 8e-57 >B8I620.1 B8I620_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 159/306 (51%), Positives = 219/306 (71%), Gaps = 1/306 (0%) Query: 15 VRPSRRKLQNKYKLFLLALPFLAVTFVFYYLPVSGWIYAFYDFIPGIPLSETPYVGLKWF 74 V+ + K ++++KLF +ALPFL + F+F YLP+ GWIY+ +D+ P L + +VGLKW Sbjct: 11 VKLKKNKHRDRFKLFFMALPFLILCFIFSYLPLYGWIYSLFDYRPPFKLYQCDFVGLKWI 70 Query: 75 RTLVANPTQTGEVLRVLKNTVAMSSLGLATSVFPVIFAILLTEIRAGWYRKFVQTLTTIP 134 +++ NP + VL+NT A+S L L TSV P+ FA+ L E++ GW+++ VQ LTT+P Sbjct: 71 TSIITNPAYRNAIGDVLRNTFAISGLNLLTSVLPLAFAVFLNEVKRGWFKRSVQILTTLP 130 Query: 135 NFISWILVYALAFSLFSVDNGVVNHILVQLGVVSEEFNFLASSSHVWLTMIAWYWWKSXX 194 NFISW+LVY++AF FS +GVVN IL+ + ++S NFLAS H WL M W WK+ Sbjct: 131 NFISWVLVYSVAFVFFSTGDGVVNKILINMDIISSPINFLASDDHTWLAMTLWSLWKTLG 190 Query: 195 XXXXXXXXXXXXXDQELYEAAEVDGASRFRKIWHITVPGIIPTFFVLLLLSIGNFVNNGM 254 DQELYEAA+VDGA RFR +W+IT+P ++PTFFVLL+LS+ NF+NNG+ Sbjct: 191 WSAIMYLAAIAGIDQELYEAAKVDGAGRFRMMWNITIPSLLPTFFVLLMLSVANFLNNGL 250 Query: 255 EQYFAFQNAMNKDAIEVLDLYVYNIAFAN-NFPFATAVSMLKSVVSVILLFAANTLSKVV 313 +QY+ FQNAMNK I+VLDLYVYNI + NFP ATAVSMLKS+VS++LLF N +SK++ Sbjct: 251 DQYYVFQNAMNKAHIQVLDLYVYNIGVGSMNFPLATAVSMLKSIVSIVLLFTVNGVSKLL 310 Query: 314 RDESII 319 R E+I+ Sbjct: 311 RGETIV 316 >B1S931.1 B1S931_9BIFI Putative uncharacterized protein Length = 345 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 165/305 (54%), Positives = 216/305 (70%), Gaps = 3/305 (0%) Query: 16 RPSRRKLQNKYKLFLLALPFLAVTFVFYYLPVSGWIYAFYDFIPGIPLSETPYVGLKWFR 75 + S RK ++ +KLFLL PFL ++ +F YLP+ GW+YAFYD+ P IPLS++ +VGL+WF+ Sbjct: 43 QQSDRK-RHGFKLFLLISPFLILSVLFSYLPLFGWVYAFYDYQPPIPLSQSEFVGLQWFK 101 Query: 76 TLVANPTQTGEVLRVLKNTVAMSSLGLATSVFPVIFAILLTEIRAGWYRKFVQTLTTIPN 135 +V NP Q + +VL NT AMS L + TS FP+ FAI L EIRA W+R +QTLTT+PN Sbjct: 102 MMVQNPAQLQTIGQVLINTFAMSGLNILTSFFPLFFAIALNEIRAKWFRNLIQTLTTLPN 161 Query: 136 FISWILVYALAFSLFSVDNGVVNHILVQLGVVSEEFNFLASSSHVWLTMIAWYWWKSXXX 195 FISW+LVYA+AF++FS G++N +L L ++SE FL S SH WL M+ W WK Sbjct: 162 FISWVLVYAVAFAMFST-TGMLNEMLQNLHIISEPIKFLDSDSHTWLKMLLWGLWKGLGW 220 Query: 196 XXXXXXXXXXXXDQELYEAAEVDGASRFRKIWHITVPGIIPTFFVLLLLSIGNFVNNGME 255 D ELYEAA+VDGA+RF++I H+T+P ++PT+FVLL+LSI NF+NNGM+ Sbjct: 221 GSIMYLAGIAGIDPELYEAAQVDGANRFQQIVHVTIPQLLPTYFVLLMLSISNFLNNGMD 280 Query: 256 QYFAFQNAMNKDAIEVLDLYVYNIAFANN-FPFATAVSMLKSVVSVILLFAANTLSKVVR 314 QYF FQNA N I+VLDLYVYN+ NN +ATA+SMLKS+VSV LL N LSK R Sbjct: 281 QYFVFQNAFNTKHIQVLDLYVYNVGMGNNSLSYATAISMLKSLVSVGLLIVVNWLSKRTR 340 Query: 315 DESII 319 SI+ Sbjct: 341 GVSIV 345 >A9KQK8.1 A9KQK8_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 478 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 157/308 (50%), Positives = 215/308 (69%), Gaps = 2/308 (0%) Query: 13 EPVRPSRRKLQNKYKLFLLALPFLAVTFVFYYLPVSGWIYAFYDFIPGIPLSETPYVGLK 72 +P + + +++ KYKLFLL +PFL + FVF YLP+ GW YAF+D+ G LS +VG K Sbjct: 172 KPDKNEKYEMETKYKLFLLIMPFLILCFVFSYLPLFGWRYAFFDYKAGDSLSLDNFVGFK 231 Query: 73 WFRTLVANPTQTGEVLRVLKNTVAMSSLGLATSVFPVIFAILLTEIRAGWYRKFVQTLTT 132 WF L N + G+++RVL+NT+AMS LGLATS + FAI L EI++ R+F+QT+TT Sbjct: 232 WFTYLFQNKSTRGDIVRVLRNTLAMSGLGLATSWCAMAFAIFLCEIKSLRLRRFIQTITT 291 Query: 133 IPNFISWILVYALAFSLFSVDNGVVNHILVQLGVVSEEFNFLASSSHVWLTMIAWYWWKS 192 IPNFISW+LV+A+AFS+FS D G ++ IL++ GV+ N+L S++H+WL M+AW WK Sbjct: 292 IPNFISWVLVFAVAFSIFSTD-GFLSSILIKYGVIDNGVNYLMSNNHMWLKMLAWGMWKG 350 Query: 193 XXXXXXXXXXXXXXXDQELYEAAEVDGASRFRKIWHITVPGIIPTFFVLLLLSIGNFVNN 252 DQ+L+EAA VDGA RF+++WHITVP ++PTF VLL+++I ++N Sbjct: 351 LGWSAIIYIAAISGIDQQLFEAATVDGAGRFQRMWHITVPSLLPTFLVLLVMAIAGILSN 410 Query: 253 GMEQYFAFQNAMNKDAIEVLDLYVYNIAFANN-FPFATAVSMLKSVVSVILLFAANTLSK 311 GM+QY FQNA N D + VLDLYVY + N P AT V M KS+VS+ILLF AN +SK Sbjct: 411 GMDQYLVFQNAYNTDTVTVLDLYVYKLGINNGKIPLATVVGMAKSIVSIILLFGANKVSK 470 Query: 312 VVRDESII 319 ++R SII Sbjct: 471 IIRGNSII 478 >C2AXD0.1 C2AXD0_9MICO Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 292 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 145/279 (51%), Positives = 195/279 (69%), Gaps = 2/279 (0%) Query: 42 FYYLPVSGWIYAFYDFIPGIPLSETPYVGLKWFRTLVANPTQTGEVLRVLKNTVAMSSLG 101 F YLP++GW A +D+ P + + + +VGL+WFR LV++ TQ ++ +V+ NT+AMS LG Sbjct: 15 FSYLPLAGWATALFDYKPALGIGGSEFVGLQWFRMLVSSRTQLEQIGQVMANTLAMSFLG 74 Query: 102 LATSVFPVIFAILLTEIRAGWYRKFVQTLTTIPNFISWILVYALAFSLFSVDNGVVNHIL 161 +ATS+ P+ FA+LL E+RA W+R VQTLTT+PNFISW+LVYA+AFSLFS +G+VN L Sbjct: 75 IATSLLPLFFAMLLNEVRAKWFRNAVQTLTTLPNFISWVLVYAIAFSLFST-SGLVNSTL 133 Query: 162 VQLGVVSEEFNFLASSSHVWLTMIAWYWWKSXXXXXXXXXXXXXXXDQELYEAAEVDGAS 221 G+++ FL S HVWLTM+ W WK D LYE+A +DGA+ Sbjct: 134 ADWGLITMPIKFLDSGEHVWLTMLLWSLWKGLGWGAIMYLAAIAGIDPTLYESARIDGAN 193 Query: 222 RFRKIWHITVPGIIPTFFVLLLLSIGNFVNNGMEQYFAFQNAMNKDAIEVLDLYVYNIAF 281 RF+ + +IT P ++PT+ VLL+LSI N +NNGMEQY+ FQNA NK I+VLDLYVYNI Sbjct: 194 RFQLMRYITFPQLMPTYIVLLMLSIANILNNGMEQYYVFQNAFNKQHIQVLDLYVYNIGL 253 Query: 282 -ANNFPFATAVSMLKSVVSVILLFAANTLSKVVRDESII 319 N+ A +SMLKS+VSV+LL AAN ++K VR SII Sbjct: 254 TGNSLSMAAVLSMLKSIVSVLLLLAANGIAKRVRGTSII 292 >B5YAV4.1 B5YAV4_DICT6 Transmembrane lipoprotein Length = 304 Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 187/299 (62%), Gaps = 8/299 (2%) Query: 23 QNKYKLFLLALPFLAVTFVFYYLPVSGWIYAFYDFIPGIPLSETPYVGLKWFRTLVANPT 82 + KY L L+ PF+ +F Y+P+ GWI AF ++ PGIP+ + +VGLK+F+ + ++P Sbjct: 12 RQKY-LILMIFPFVVWLIIFRYIPLWGWITAFQNYKPGIPIFQQQWVGLKYFKEMFSDP- 69 Query: 83 QTGEVLRVLKNTVAMSSLGLATSV-FPVIFAILLTEIRAGWYRKFVQTLTTIPNFISWIL 141 E V++NT+AMS LGL P+I AIL+ EIR +++ VQT++ +P+F+SW++ Sbjct: 70 ---EFYLVMRNTLAMSLLGLIFGFPLPIILAILINEIRHNTFKRTVQTISYLPHFVSWVI 126 Query: 142 VYALAFSLFSVDNGVVNHILVQLGVVSEEFNFLASSSHVWLTMIAWYWWKSXXXXXXXXX 201 V ++ ++ + D GVVN+ L++LG++ + F + W ++ WK Sbjct: 127 VASIVHAMLAPD-GVVNYALLKLGLIKQPILFFGEPKYFWWIVVFSDIWKELGWNTIIFL 185 Query: 202 XXXXXXDQELYEAAEVDGASRFRKIWHITVPGIIPTFFVLLLLSIGNFVNNGMEQYFAFQ 261 + ELYEAAEVDGASRFRKIWHIT+PGI+PT ++L+LSIGN +N G E+ F + Sbjct: 186 AAMTAINPELYEAAEVDGASRFRKIWHITLPGIMPTVIMILILSIGNIINIGFERQFLLR 245 Query: 262 NAMNKDAIEVLDLYVYNIAF-ANNFPFATAVSMLKSVVSVILLFAANTLSKVVRDESII 319 + ++ +V+DLY + A F F TA + KSV+S+ILLF+AN +SK V II Sbjct: 246 TSAVRNVSDVIDLYALDYGIRAGRFSFGTAAGIFKSVISLILLFSANKVSKKVTGHKII 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,711,882,045 Number of extensions: 64481768 Number of successful extensions: 254975 Number of sequences better than 1.0e-05: 2543 Number of HSP's gapped: 254400 Number of HSP's successfully gapped: 2544 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)