BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0022.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BDA6.1 Q2BDA6_9BACI Hypothetical Membrane Associated Protein 226 9e-58 B1DA74.1 B1DA74_9BACL SMP-30/Gluconolaconase/LRE domain protein 216 8e-55 A8UJP8.1 A8UJP8_9FLAO Possible regucalcin-like protein 206 7e-52 C2XUK6.1 C2XUK6_BACCE Senescence marker protein-30 206 1e-51 A4CNZ0.1 A4CNZ0_9FLAO Regucalcin family protein 201 5e-50 >Q2BDA6.1 Q2BDA6_9BACI Hypothetical Membrane Associated Protein Length = 291 Score = 226 bits (576), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 138/207 (66%) Query: 1 LELLAHVEKDLPGNRLNDAKCDSKGRLWFGTMSMEDKRDAGSLYVMEPGGEVRKVLSGIG 60 L L+ +E D+P NR ND KCD GR W GTM + G+LY ++ +V K L +G Sbjct: 85 LTLIKELESDIPSNRFNDGKCDPAGRFWAGTMDQQGAGAEGALYCLDTDQQVEKKLDQLG 144 Query: 61 ISNGLAWDDSCGLMYYIDTLTRGVDVMDYDLQNGTVSGRRTVVRFPEGAGSPDGMTIDSE 120 ISNGLAW MY+IDT T+ + D+DL G + R V+ FPEG G+PDGMTID E Sbjct: 145 ISNGLAWSPDNRFMYFIDTPTKKISRFDFDLGTGAIENRTEVISFPEGDGAPDGMTIDGE 204 Query: 121 GMIWVAHWNGGCVSRWNPHTGEQIGKIEVPAPFVTSCAFGGGHLNELYITSARGSMSPEE 180 GM+W+AH+ GG VSRWNPHTG+++ +I+VPA VT C FGG L +LYIT+AR ++ E+ Sbjct: 205 GMLWIAHYGGGKVSRWNPHTGKKLSEIKVPAKNVTCCTFGGEDLKDLYITTARDGLNEEQ 264 Query: 181 LQRWPLAGGLFKANTGIRGVPANCFAG 207 + +PL+GGLF+ T ++G PA + G Sbjct: 265 QKEYPLSGGLFRVKTDVKGSPAYSYKG 291 >B1DA74.1 B1DA74_9BACL SMP-30/Gluconolaconase/LRE domain protein Length = 291 Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 106/203 (52%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 1 LELLAHVEKDLPGNRLNDAKCDSKGRLWFGTMSMEDKRDAGSLYVMEPGGEVRKVLSGIG 60 + L+A E++ NRLND KCD GR W GTM KR+ G LYV+E G ++ K LSGIG Sbjct: 87 ISLIARTEEETATNRLNDGKCDPAGRFWAGTMISTRKRN-GHLYVLEDG-KLSKRLSGIG 144 Query: 61 ISNGLAWDDSCGLMYYIDTLTRGVDVMDYDLQNGTVSGRRTVVRFPEGAGSPDGMTIDSE 120 SNGLAW +MYYIDT V DYD +G ++ RR V+RFPEG GSPDGM+IDSE Sbjct: 145 CSNGLAWTADGTVMYYIDTFENEVYAFDYDTASGQIANRRIVIRFPEGEGSPDGMSIDSE 204 Query: 121 GMIWVAHWNGGCVSRWNPHTGEQIGKIEVPAPFVTSCAFGGGHLNELYITSARGSMSPEE 180 GM+W+ HW G + RWNP TGE++ I +P VTSCAFGG +L+ELYIT+AR E+ Sbjct: 205 GMLWIGHWGGWQIGRWNPLTGEKLATIPIPVRNVTSCAFGGENLDELYITTARIGNDEEQ 264 Query: 181 LQRWPLAGGLFKANTGIRGVPAN 203 L+ PLAG +F+ ++G+P Sbjct: 265 LKEQPLAGAIFRVKLDVKGLPVQ 287 >A8UJP8.1 A8UJP8_9FLAO Possible regucalcin-like protein Length = 354 Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 130/203 (64%) Query: 3 LLAHVEKDLPGNRLNDAKCDSKGRLWFGTMSMEDKRDAGSLYVMEPGGEVRKVLSGIGIS 62 L + + + L +RLND KCD GRLW G+M+ + + L+ ++ V ++ + IS Sbjct: 151 LFSDMREVLTNSRLNDGKCDPSGRLWVGSMNWQQETGKAKLFTIKNDSSVTTKINSVTIS 210 Query: 63 NGLAWDDSCGLMYYIDTLTRGVDVMDYDLQNGTVSGRRTVVRFPEGAGSPDGMTIDSEGM 122 NG+ W MYYIDT T + DY+ +G +S R VV PE G PDGMTID+E M Sbjct: 211 NGIVWTKDKTTMYYIDTPTSQIKAYDYNNASGDISNERVVVEIPEELGFPDGMTIDAEDM 270 Query: 123 IWVAHWNGGCVSRWNPHTGEQIGKIEVPAPFVTSCAFGGGHLNELYITSARGSMSPEELQ 182 +WV WNG V R+NP TG+ + KIEVPA VTSCAFGG +L LYITSA+ M+ EEL+ Sbjct: 271 VWVGMWNGNAVIRFNPKTGKLLQKIEVPAHNVTSCAFGGENLETLYITSAKLDMTEEELE 330 Query: 183 RWPLAGGLFKANTGIRGVPANCF 205 ++PLAG +FK N G++GV +N F Sbjct: 331 KYPLAGSVFKINPGVKGVKSNFF 353 >C2XUK6.1 C2XUK6_BACCE Senescence marker protein-30 Length = 300 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 99/207 (47%), Positives = 130/207 (62%), Gaps = 3/207 (1%) Query: 2 ELLAHV---EKDLPGNRLNDAKCDSKGRLWFGTMSMEDKRDAGSLYVMEPGGEVRKVLSG 58 ++L+H+ E DL NR ND KCD GR W GT + AGSLY + V K +S Sbjct: 84 KILSHIYDPEPDLLENRFNDGKCDPAGRFWAGTTDLYGINAAGSLYCLNNNFNVDKKVSH 143 Query: 59 IGISNGLAWDDSCGLMYYIDTLTRGVDVMDYDLQNGTVSGRRTVVRFPEGAGSPDGMTID 118 + SNG+AW +Y+IDT T+ V DYD+ G +S V+ FPE PDGMTID Sbjct: 144 VNTSNGIAWSPDHTFLYFIDTPTKKVVRFDYDVHTGEISNPSDVIIFPENDCLPDGMTID 203 Query: 119 SEGMIWVAHWNGGCVSRWNPHTGEQIGKIEVPAPFVTSCAFGGGHLNELYITSARGSMSP 178 EG +W+AHW G V+RWNP TGEQI I +PA +VTSC FGG +L +LYIT+AR M+ Sbjct: 204 EEGCLWIAHWGGSKVTRWNPLTGEQILSIPIPALYVTSCTFGGPNLTDLYITTARTRMTD 263 Query: 179 EELQRWPLAGGLFKANTGIRGVPANCF 205 EEL+++P AGG+F+ T ++G P F Sbjct: 264 EELKQYPHAGGIFRIQTNVKGCPTYSF 290 >A4CNZ0.1 A4CNZ0_9FLAO Regucalcin family protein Length = 306 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 130/206 (63%), Gaps = 1/206 (0%) Query: 2 ELLAHVEKDLPGNRLNDAKCDSKGRLWFGTMSMEDKRDAGSLYVMEPGGEVRKVLSGIGI 61 +LL +E G R ND KCD GR W GTM + + R G+LY + P G+ ++ L GI I Sbjct: 93 KLLTALEHIPDGIRFNDGKCDPAGRFWIGTMPLSEDRPIGALYCLGPDGDCKEQLRGITI 152 Query: 62 SNGLAWDDSCGLMYYIDTLTRGVDVMDYDLQNGTVSGRRTVVRFPEGAGSPDGMTIDSEG 121 SNGLAW+ + MYYIDT TR V D+ + G ++ RR PE G PDGMTIDSE Sbjct: 153 SNGLAWNAAGTTMYYIDTPTRAVQAFDFHPETGALTNRRIAFGIPESEGFPDGMTIDSED 212 Query: 122 MIWVAHWNGGCVSRWNPHTGEQIGKIEVPAPFVTSCAFGGGHLNELYITSARGSMSPEEL 181 +W+AHW G V+RW+P TG ++G +PA +TSC+FGG +LYITSA ++ EL Sbjct: 213 KLWIAHWGGWQVARWDPETGRKLGAFPLPAAQITSCSFGGPEGEDLYITSASKGLTLGEL 272 Query: 182 QRWPLAGGLFKA-NTGIRGVPANCFA 206 ++ PLAG LF N+G RG PAN FA Sbjct: 273 EKQPLAGSLFVVKNSGFRGRPANRFA 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,431,525,459 Number of extensions: 64881029 Number of successful extensions: 119530 Number of sequences better than 1.0e-05: 710 Number of HSP's gapped: 118359 Number of HSP's successfully gapped: 713 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)