BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0020.p (208 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIG8.1 B1DIG8_9BACL Putative uncharacterized protein 290 7e-77 Q184I3.1 Q184I3_CLOD6 Putative uncharacterized protein 252 1e-65 Q2WFW6.1 Q2WFW6_9CLOT Putative uncharacterized protein orf1 228 3e-58 C4C6L8.1 C4C6L8_9FUSO Uncharacterized conserved protein 217 5e-55 C4GGZ4.1 C4GGZ4_9NEIS Putative uncharacterized protein 216 1e-54 >B1DIG8.1 B1DIG8_9BACL Putative uncharacterized protein Length = 207 Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 129/202 (63%), Positives = 161/202 (79%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MKYEWKK DK++Y P P +I VP NYF L+G GNPN EFA+AVGVLYSL+Y +KML Sbjct: 1 MKYEWKKNDKSLYLPKNVPTVIEVPPMNYFTLKGKGNPNYPEFAEAVGVLYSLSYTVKML 60 Query: 61 PKKGPAPEGYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIM 120 PKKG APEGY++Y++FPLEG+WDL E+ R A LDK++L+Y++MIRQP+F+T LA ++ Sbjct: 61 PKKGAAPEGYYDYAVFPLEGIWDLDEEARQAAVLDKDKLIYSLMIRQPDFITETLAQEVI 120 Query: 121 EKVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLSKTH 180 E V + KPHPLL FG ++G VQM+H GPYD+EPASF KMEQYC E GL+RLSK H Sbjct: 121 ETVCKKKPHPLLSNVTFGKLDEGLCVQMMHHGPYDDEPASFDKMEQYCEEQGLKRLSKLH 180 Query: 181 REIYLTDARRTQPEKQKTVLRF 202 +EIY++DAR+TQPEK KTVLRF Sbjct: 181 KEIYISDARKTQPEKLKTVLRF 202 >Q184I3.1 Q184I3_CLOD6 Putative uncharacterized protein Length = 208 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 114/208 (54%), Positives = 148/208 (71%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MKYEW+K+DK +Y P PV++ +P + ML+G+G+PNS+EF +A+GVLYSL YAIK + Sbjct: 1 MKYEWRKRDKELYLPKKNPVIVEIPEQKFIMLKGSGDPNSKEFTEAIGVLYSLAYAIKTM 60 Query: 61 PKKGPAPEGYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIM 120 PKKG PEGY +Y++FPLEG+WD EK + L K +L+YTIMIRQP+FVT DL Sbjct: 61 PKKGIVPEGYFDYTVFPLEGIWDKGEKSKGLDVLIKEDLIYTIMIRQPDFVTQDLLDKAT 120 Query: 121 EKVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLSKTH 180 + V++ KPH LL+K FGS +G VQMLH G YD EP SF M ++C ++ L R S TH Sbjct: 121 DIVKKKKPHNLLEKVRFGSINEGLCVQMLHIGSYDNEPESFDIMNEFCKKNKLIRKSYTH 180 Query: 181 REIYLTDARRTQPEKQKTVLRFLVAEET 208 REIY++DAR+ PE KTVLRF V E Sbjct: 181 REIYISDARKVSPESLKTVLRFEVEREV 208 >Q2WFW6.1 Q2WFW6_9CLOT Putative uncharacterized protein orf1 Length = 211 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 103/207 (49%), Positives = 145/207 (70%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MK+ +KK +K +Y P P L+ VP +F ++G G+PN E+F + VGVLY+L+YA++M+ Sbjct: 1 MKHGYKKHEKELYCPKDTPHLLRVPKQKFFCIEGQGDPNKEDFTERVGVLYTLSYAVRMM 60 Query: 61 PKKGPAPEGYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIM 120 PK G P GY EY+++PLEG+WDL+E GR+ LDKNEL+YTIMIRQP+FVT ++ Sbjct: 61 PKNGFIPNGYFEYTVYPLEGIWDLTENGRNLTYLDKNELLYTIMIRQPDFVTDEVVKKAF 120 Query: 121 EKVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLSKTH 180 E + KP LL++A F EDG SVQ+LHTG YD EP SF KM + ++ +R TH Sbjct: 121 EIAHKKKPDSLLKEAYFTEIEDGLSVQILHTGSYDTEPQSFGKMIDFIEQNNYKRRLLTH 180 Query: 181 REIYLTDARRTQPEKQKTVLRFLVAEE 207 REIYL+D R+T+ K KT+LR+ + ++ Sbjct: 181 REIYLSDVRKTETSKLKTILRYTIEDK 207 >C4C6L8.1 C4C6L8_9FUSO Uncharacterized conserved protein Length = 207 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 99/205 (48%), Positives = 138/205 (67%), Gaps = 1/205 (0%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MKYEWKKQ+K IY P +P I + + Y L+G+GNPN F++ G L+SL+Y +KML Sbjct: 1 MKYEWKKQEKEIYLPKGKPEQIFIKKFRYLTLEGSGNPNESLFSELTGALFSLSYTLKML 60 Query: 61 PKKGPAPEGYHEYSIFPLEGVWDLS-EKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSI 119 PKKG P+GY +Y+++PLEG+WDL + + LDKN+LVY IMIRQP+F+ ++ + Sbjct: 61 PKKGITPDGYFDYAVYPLEGIWDLDIDSDFDETKLDKNKLVYKIMIRQPDFINKEIIETA 120 Query: 120 MEKVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLSKT 179 E +++ K + K F EDG +VQM+HTG YD E SF KM+ +C E+ L SK Sbjct: 121 AEILKKKKTVMYIDKIKFEEIEDGLAVQMMHTGSYDSETESFEKMKNFCLENKLNIRSKA 180 Query: 180 HREIYLTDARRTQPEKQKTVLRFLV 204 H+EIY+++ RT PEK KTVLR+ V Sbjct: 181 HKEIYISNPERTAPEKLKTVLRYFV 205 >C4GGZ4.1 C4GGZ4_9NEIS Putative uncharacterized protein Length = 204 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/204 (50%), Positives = 139/204 (68%), Gaps = 1/204 (0%) Query: 1 MKYEWKKQDKAIYFPPAEPVLITVPAYNYFMLQGTGNPNSEEFAQAVGVLYSLTYAIKML 60 MK EWKK K +Y EPVL+ VPA + M+ G GNPN+ +F++ VG LYSL YA+KM Sbjct: 1 MKQEWKKSHKNLYGIKIEPVLLDVPAQQFIMIDGEGNPNAADFSERVGTLYSLAYAVKMG 60 Query: 61 PKKGPAPEGYHEYSIFPLEGVWDLSEKGRSQAALDKNELVYTIMIRQPEFVTPDLAGSIM 120 KK A +++++PLEGVW + Q ALDKN L YTIMI QP+F+TP++ + Sbjct: 61 YKKTAAGREVDDFAVYPLEGVWRQKTQA-GQGALDKNSLEYTIMIAQPDFITPEMWQDAL 119 Query: 121 EKVQRTKPHPLLQKAVFGSSEDGPSVQMLHTGPYDEEPASFRKMEQYCAEHGLRRLSKTH 180 K + KP+PL ++ FGS DG V +LH G +D+EP SF +M+++C EHGL+R S H Sbjct: 120 AKTRVKKPNPLYEEVRFGSMSDGRCVSILHIGAFDDEPRSFAEMDRFCREHGLQRRSDIH 179 Query: 181 REIYLTDARRTQPEKQKTVLRFLV 204 REIYL++A RT PEK+KT+LR+ V Sbjct: 180 REIYLSNANRTAPEKRKTLLRYAV 203 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,332,604,704 Number of extensions: 55481744 Number of successful extensions: 124396 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 124035 Number of HSP's successfully gapped: 141 Length of query: 208 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 78 Effective length of database: 1,835,964,253 Effective search space: 143205211734 Effective search space used: 143205211734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)