BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0018.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KY55.1 Q5KY55_GEOKA Hypothetical conserved protein 126 1e-27 C3J266.1 C3J266_9BACI Putative uncharacterized protein 125 2e-27 B7YCB8.1 B7YCB8_9BACI Putative uncharacterized protein 125 2e-27 B1DCV2.1 B1DCV2_9BACL Conserved hypothetical cytosolic protein 124 4e-27 B4BNR3.1 B4BNR3_9BACI Putative uncharacterized protein 120 4e-26 >Q5KY55.1 Q5KY55_GEOKA Hypothetical conserved protein Length = 234 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 116/211 (54%), Gaps = 25/211 (11%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGE------------ 48 ++G +GD+DC +L + G V GS+ ++ + G+ +V GG+E E Sbjct: 24 LSGNGKLYGDIDCLELQVQGNAAVEGSVKANTVHIAGKGNVAGGVECEWMKVSGSIRIEE 83 Query: 49 -------SLRGQGEIRAECVHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLE 101 ++RG G ++ C E ++ G L V G+C AE M++ G + GLL+A +E Sbjct: 84 NVQCQEATVRGHGLVKGSCT-AETVRVHGELDVGGDCSAERMEVEGHFTVGGLLNAGYIE 142 Query: 102 LSLFGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADT 161 + LFGPSRA E+GG +I +KR G +L + P +L A +IEGD V L++T A T Sbjct: 143 VKLFGPSRAKEIGGETIMVKRQ-GSSLFKK--WFFPAEL--TADVIEGDIVHLEHTTAKT 197 Query: 162 VRGGRVVIGSGCEIGTVEYRDFLDIHPNAVV 192 VRG RV IG GC I VEYR+ L+ A + Sbjct: 198 VRGNRVTIGPGCNIERVEYREALECDEEAKI 228 >C3J266.1 C3J266_9BACI Putative uncharacterized protein Length = 234 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 25/211 (11%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGE------------ 48 ++G +GD+DC ++ + G V GS+ ++ + G+ V GGI+ E Sbjct: 24 LSGNGKLYGDIDCLEMQVQGNAAVEGSVKANTVHIAGKGHVTGGIKCEWMKVSGSVKIGE 83 Query: 49 -------SLRGQGEIRAECVHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLE 101 ++RG G ++ C E ++ G L V G+C AE M++ G + GLL+A+ +E Sbjct: 84 HVQCQEATVRGHGLVKGSCT-AETVRVHGELDVGGDCSAERMEVEGHFTVGGLLNADYIE 142 Query: 102 LSLFGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADT 161 + LFGPSRA E+GG +I +KR G +L + P +L A +IEGD V L++T A T Sbjct: 143 VKLFGPSRAKEIGGETIMVKRQ-GSSLFKK--WFFPAEL--TADVIEGDIVHLEHTTAKT 197 Query: 162 VRGGRVVIGSGCEIGTVEYRDFLDIHPNAVV 192 VRG RV IG GC+I VEY++ L+ A + Sbjct: 198 VRGNRVTIGPGCDIERVEYKEMLECDEGAKI 228 >B7YCB8.1 B7YCB8_9BACI Putative uncharacterized protein Length = 234 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 25/211 (11%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGE------------ 48 ++G +GD+DC ++ + G V GS+ ++ + G+ V GGI+ E Sbjct: 24 LSGNGKLYGDIDCLEMQVQGNAAVEGSVKANTVHIAGKGHVTGGIKCEWMKVSGSVKIGE 83 Query: 49 -------SLRGQGEIRAECVHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLE 101 ++RG G ++ C E ++ G L V G+C AE M++ G + GLL+A+ +E Sbjct: 84 HVQCQEATVRGHGLVKGSCT-AETVRVHGELDVGGDCSAERMEVEGHFTVGGLLNADYIE 142 Query: 102 LSLFGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADT 161 + LFGPSRA E+GG +I +KR G +L + P +L A +IEGD V L++T A T Sbjct: 143 VKLFGPSRAKEIGGETIMVKRQ-GSSLFKK--WFFPAEL--TADVIEGDIVHLEHTTAKT 197 Query: 162 VRGGRVVIGSGCEIGTVEYRDFLDIHPNAVV 192 VRG RV IG GC+I VEY++ L+ A + Sbjct: 198 VRGNRVTIGPGCDIERVEYKEMLECDEGAKI 228 >B1DCV2.1 B1DCV2_9BACL Conserved hypothetical cytosolic protein Length = 245 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 23/218 (10%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRGQGEIRA-- 58 + GE + GD C +L+ +G ++ G++ + M + G C V GG+ G L+ G + Sbjct: 31 IVGEGSIEGDTSCTRLSCVGTLEIDGTVTADKMNIVGTCEVTGGLRGGELKTSGTVSVGG 90 Query: 59 ----------------ECVHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLEL 102 V+ E IK G L G+C+AE G +I GLL+A L++ Sbjct: 91 ITQLRELNIAGTIESKNHVYSEQIKLKGMLQTLGDCEAEQFTARGIFEIGGLLNAGKLQI 150 Query: 103 SLFGPSRAAEVGGGSIKIKRSLGGALIRP-GXXXXPGQ-LRFAAGLIEGDHVDLQNTAAD 160 L+ +A E+GGG I ++++ + P P R ++EGDH+ L+NT AD Sbjct: 151 HLYRDCKAHEIGGGHIIVRKA---KWLHPLSFFFKPSSSARLTVSVMEGDHIYLENTIAD 207 Query: 161 TVRGGRVVIGSGCEIGTVEYRDFLDIHPNAVVRNQVKV 198 VRG +VVIG GCEIG VE++D + ++VVR+ KV Sbjct: 208 IVRGNQVVIGPGCEIGLVEFKDHFENRKDSVVRDNRKV 245 >B4BNR3.1 B4BNR3_9BACI Putative uncharacterized protein Length = 344 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 109/215 (50%), Gaps = 21/215 (9%) Query: 1 VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGES----------- 49 + GE T HGD++C + + G V G++ +++L GE + G + E+ Sbjct: 24 IRGEATIHGDIECDRCKVFGSADVKGAVTARTIRLFGEADINGLVRAETMGVFGEADIRG 83 Query: 50 --------LRGQGEIRAECVHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLE 101 LRG+ E++ V I+ G LSVSG+C+AE + ++G V I L+AE +E Sbjct: 84 DAHVQHLQLRGKAEMKGN-VEATAIRGYGELSVSGSCEAETVSLTGVVHIGQTLNAEQVE 142 Query: 102 LSL-FGPSRAAEVGGGSIKIKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAAD 160 LSL F S E+GG +I I+R P A +IEGD + L+ T A Sbjct: 143 LSLYFATSTIKEIGGQTIHIRRGSKWKAFHWLTRFSPLTATLTAEVIEGDEIYLEYTKAA 202 Query: 161 TVRGGRVVIGSGCEIGTVEYRDFLDIHPNAVVRNQ 195 VRG +V IG GCEIG VEYR L AVV+ + Sbjct: 203 VVRGEKVTIGPGCEIGLVEYRTALVQDEKAVVKRK 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,116,011,402 Number of extensions: 42735288 Number of successful extensions: 95862 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 94910 Number of HSP's successfully gapped: 187 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)