BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0017.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3J266.1 C3J266_9BACI Putative uncharacterized protein 112 2e-23 B7YCB8.1 B7YCB8_9BACI Putative uncharacterized protein 112 2e-23 A4IPT7.1 A4IPT7_GEOTN Putative uncharacterized protein 111 5e-23 B4BNR2.1 B4BNR2_9BACI Putative uncharacterized protein 111 5e-23 Q5KY55.1 Q5KY55_GEOKA Hypothetical conserved protein 111 6e-23 >C3J266.1 C3J266_9BACI Putative uncharacterized protein Length = 234 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 6/201 (2%) Query: 26 VSLEGLSRINGPVTAMTFTGNGRMKVGGSLTVEQMETNGDLKIGGGLRIGTMKHXXXXXX 85 + ++G + + G V A T G+ V G + E M+ +G +KIG ++ Sbjct: 39 MQVQGNAAVEGSVKANTVHIAGKGHVTGGIKCEWMKVSGSVKIGEHVQCQEATVRGHGLV 98 Query: 86 XXXXXXESFTLNGVADIKGDCELEKFTAEGVVTIGGFLSAGCVELVLQGQAKVKELGVES 145 E+ ++G D+ GDC E+ EG T+GG L+A +E+ L G ++ KE+G E+ Sbjct: 99 KGSCTAETVRVHGELDVGGDCSAERMEVEGHFTVGGLLNADYIEVKLFGPSRAKEIGGET 158 Query: 146 LVIRKGGSGVWNKLAGGIIPKLRPELQAKVIEGDFLDLEYTTAEVVRGAVIIIGEGCSIG 205 +++++ GS ++ K P EL A VIEGD + LE+TTA+ VRG + IG GC I Sbjct: 159 IMVKRQGSSLFKKW---FFP---AELTADVIEGDIVHLEHTTAKTVRGNRVTIGPGCDIE 212 Query: 206 RVEYRDRLTVHPGASVGMEEK 226 RVEY++ L GA +G EK Sbjct: 213 RVEYKEMLECDEGAKIGTIEK 233 >B7YCB8.1 B7YCB8_9BACI Putative uncharacterized protein Length = 234 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 6/201 (2%) Query: 26 VSLEGLSRINGPVTAMTFTGNGRMKVGGSLTVEQMETNGDLKIGGGLRIGTMKHXXXXXX 85 + ++G + + G V A T G+ V G + E M+ +G +KIG ++ Sbjct: 39 MQVQGNAAVEGSVKANTVHIAGKGHVTGGIKCEWMKVSGSVKIGEHVQCQEATVRGHGLV 98 Query: 86 XXXXXXESFTLNGVADIKGDCELEKFTAEGVVTIGGFLSAGCVELVLQGQAKVKELGVES 145 E+ ++G D+ GDC E+ EG T+GG L+A +E+ L G ++ KE+G E+ Sbjct: 99 KGSCTAETVRVHGELDVGGDCSAERMEVEGHFTVGGLLNADYIEVKLFGPSRAKEIGGET 158 Query: 146 LVIRKGGSGVWNKLAGGIIPKLRPELQAKVIEGDFLDLEYTTAEVVRGAVIIIGEGCSIG 205 +++++ GS ++ K P EL A VIEGD + LE+TTA+ VRG + IG GC I Sbjct: 159 IMVKRQGSSLFKKW---FFP---AELTADVIEGDIVHLEHTTAKTVRGNRVTIGPGCDIE 212 Query: 206 RVEYRDRLTVHPGASVGMEEK 226 RVEY++ L GA +G EK Sbjct: 213 RVEYKEMLECDEGAKIGTIEK 233 >A4IPT7.1 A4IPT7_GEOTN Putative uncharacterized protein Length = 234 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 104/201 (51%), Gaps = 6/201 (2%) Query: 26 VSLEGLSRINGPVTAMTFTGNGRMKVGGSLTVEQMETNGDLKIGGGLRIGTMKHXXXXXX 85 + ++G + + G V A G+ V G + E ++ +G + + G ++ Sbjct: 39 MRVQGNATVEGNVKANVVHIAGKGYVKGGVDCEWIKVSGSVNVEGNMQCQEATVRGRGTV 98 Query: 86 XXXXXXESFTLNGVADIKGDCELEKFTAEGVVTIGGFLSAGCVELVLQGQAKVKELGVES 145 E G D+ GDC E+F +G TIGG L+AG V + L G +V+E+G E+ Sbjct: 99 KGAWTAEEIRAYGELDVGGDCSAERFEIDGHFTIGGLLNAGYVAVKLLGPCRVQEIGGET 158 Query: 146 LVIRKGGSGVWNKLAGGIIPKLRPELQAKVIEGDFLDLEYTTAEVVRGAVIIIGEGCSIG 205 +V++K + +W KL P P L A VIEGD + LE+TTA+ VRG + IG GC I Sbjct: 159 IVVKKQSASLWKKL---FFP---PGLTADVIEGDEIHLEHTTAKTVRGNRVTIGPGCEIE 212 Query: 206 RVEYRDRLTVHPGASVGMEEK 226 RVEYRD L A +G EK Sbjct: 213 RVEYRDMLECDEEAKIGTVEK 233 >B4BNR2.1 B4BNR2_9BACI Putative uncharacterized protein Length = 234 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 104/201 (51%), Gaps = 6/201 (2%) Query: 26 VSLEGLSRINGPVTAMTFTGNGRMKVGGSLTVEQMETNGDLKIGGGLRIGTMKHXXXXXX 85 + ++G + + G V A G+ V G + E ++ +G + + G ++ Sbjct: 39 MRVQGNATVEGNVKANVVHIAGKGYVKGGVDCEWIKVSGSVNVEGNMQCQEATVRGRGTV 98 Query: 86 XXXXXXESFTLNGVADIKGDCELEKFTAEGVVTIGGFLSAGCVELVLQGQAKVKELGVES 145 E G D+ GDC E+F +G TIGG L+AG V + L G +V+E+G E+ Sbjct: 99 KGAWTAEEIRAYGELDVGGDCSAERFEIDGHFTIGGLLNAGYVAVKLLGPCRVQEIGGET 158 Query: 146 LVIRKGGSGVWNKLAGGIIPKLRPELQAKVIEGDFLDLEYTTAEVVRGAVIIIGEGCSIG 205 +V++K + +W KL P P L A VIEGD + LE+TTA+ VRG + IG GC I Sbjct: 159 IVVKKQSASLWKKL---FFP---PGLTADVIEGDEIHLEHTTAKTVRGNRVTIGPGCEIE 212 Query: 206 RVEYRDRLTVHPGASVGMEEK 226 RVEYRD L A +G EK Sbjct: 213 RVEYRDMLECDEEAKIGTVEK 233 >Q5KY55.1 Q5KY55_GEOKA Hypothetical conserved protein Length = 234 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 6/201 (2%) Query: 26 VSLEGLSRINGPVTAMTFTGNGRMKVGGSLTVEQMETNGDLKIGGGLRIGTMKHXXXXXX 85 + ++G + + G V A T G+ V G + E M+ +G ++I ++ Sbjct: 39 LQVQGNAAVEGSVKANTVHIAGKGNVAGGVECEWMKVSGSIRIEENVQCQEATVRGHGLV 98 Query: 86 XXXXXXESFTLNGVADIKGDCELEKFTAEGVVTIGGFLSAGCVELVLQGQAKVKELGVES 145 E+ ++G D+ GDC E+ EG T+GG L+AG +E+ L G ++ KE+G E+ Sbjct: 99 KGSCTAETVRVHGELDVGGDCSAERMEVEGHFTVGGLLNAGYIEVKLFGPSRAKEIGGET 158 Query: 146 LVIRKGGSGVWNKLAGGIIPKLRPELQAKVIEGDFLDLEYTTAEVVRGAVIIIGEGCSIG 205 +++++ GS ++ K P EL A VIEGD + LE+TTA+ VRG + IG GC+I Sbjct: 159 IMVKRQGSSLFKKW---FFP---AELTADVIEGDIVHLEHTTAKTVRGNRVTIGPGCNIE 212 Query: 206 RVEYRDRLTVHPGASVGMEEK 226 RVEYR+ L A +G EK Sbjct: 213 RVEYREALECDEEAKIGTIEK 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,178,066,170 Number of extensions: 45535389 Number of successful extensions: 104519 Number of sequences better than 1.0e-05: 183 Number of HSP's gapped: 104022 Number of HSP's successfully gapped: 185 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 129 (54.3 bits)