BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0016.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z875.1 C0Z875_BREBN Putative uncharacterized protein 164 4e-39 C3J265.1 C3J265_9BACI Putative uncharacterized protein 154 4e-36 B7YCB9.1 B7YCB9_9BACI Putative uncharacterized protein 154 4e-36 A4IPT8.1 A4IPT8_GEOTN Putative uncharacterized protein 151 4e-35 B4BNR1.1 B4BNR1_9BACI Putative uncharacterized protein 151 4e-35 >C0Z875.1 C0Z875_BREBN Putative uncharacterized protein Length = 210 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 126/207 (60%), Gaps = 2/207 (0%) Query: 7 MEEDLISKKELLDLTGISYGQLYRWKRKQLIPESWFIRKSTYTGQETFFPKERMLGRIQH 66 ++ ++ISKK+LL+LTGISYGQLYRWKRK LIPE WFIR++T+TGQETFFP+E++L RI Sbjct: 4 LDANVISKKDLLELTGISYGQLYRWKRKNLIPEEWFIRRATFTGQETFFPREQILARIDK 63 Query: 67 IXXXXXXXXXXELAGKLSDMSSVHKQWLTIEEVRERNIVSSITLERYGQCDRDEHKYSFE 126 I ELA S S+ LT EE+ RNIVS+ +LE + ++F+ Sbjct: 64 ILNMKDDLSLDELADMFS--PSMSGTSLTAEELLARNIVSTTSLEVFNVFLGSLRTFTFQ 121 Query: 127 QLIHLVAVDXXXXXXXXXXXXADLLHRTLSMNRTQFGGKRWELFFARKMGVSFFLQAQAP 186 Q ++ ++ L + L+ + +F GK EL F RKMG+S F+ + Sbjct: 122 QALYAYVLEKLLAAGDLSVDEGGGLLQVLASHYPKFEGKPCELIFMRKMGISTFVLVSSS 181 Query: 187 SELVFDEGVRLISRITLEDLTEQLQGK 213 +E+ FD GV+++ R+ L + E+L+GK Sbjct: 182 TEMYFDSGVKVVKRLDLANCIEELKGK 208 >C3J265.1 C3J265_9BACI Putative uncharacterized protein Length = 209 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 122/206 (59%), Gaps = 4/206 (1%) Query: 7 MEEDLISKKELLDLTGISYGQLYRWKRKQLIPESWFIRKSTYTGQETFFPKERMLGRIQH 66 ME++LISKKELL+LTGISYGQLYRWKRK+LIPE WFIRKST+TGQETFFPKE++L RI+ Sbjct: 1 MEQELISKKELLELTGISYGQLYRWKRKKLIPEEWFIRKSTFTGQETFFPKEKILARIEK 60 Query: 67 IXXXXXXXXXXELAGKLS-DMSSVHKQWLTIEEVRERNIVSSITLERYGQCDRDEHKYSF 125 I ELAG + D ++V LT EEV +R+IVS++ L+ D SF Sbjct: 61 IKELKDELSLDELAGMFAPDPAAVV---LTKEEVIKRHIVSNVALQWLSDQLGDRQDVSF 117 Query: 126 EQLIHLVAVDXXXXXXXXXXXXADLLHRTLSMNRTQFGGKRWELFFARKMGVSFFLQAQA 185 QL+ L VD + + + GK EL RKMGV+ L + Sbjct: 118 GQLLSLYIVDRLLRSGEISIEEGKNIWMMFESHYPKLQGKSCELVVLRKMGVTVCLLVEE 177 Query: 186 PSELVFDEGVRLISRITLEDLTEQLQ 211 + L +EG +L++R+ + E+L+ Sbjct: 178 AAGLYVEEGAKLVARLHVPTYIEELK 203 >B7YCB9.1 B7YCB9_9BACI Putative uncharacterized protein Length = 209 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 122/206 (59%), Gaps = 4/206 (1%) Query: 7 MEEDLISKKELLDLTGISYGQLYRWKRKQLIPESWFIRKSTYTGQETFFPKERMLGRIQH 66 ME++LISKKELL+LTGISYGQLYRWKRK+LIPE WFIRKST+TGQETFFPKE++L RI+ Sbjct: 1 MEQELISKKELLELTGISYGQLYRWKRKKLIPEEWFIRKSTFTGQETFFPKEKILARIEK 60 Query: 67 IXXXXXXXXXXELAGKLS-DMSSVHKQWLTIEEVRERNIVSSITLERYGQCDRDEHKYSF 125 I ELAG + D ++V LT EEV +R+IVS++ L+ D SF Sbjct: 61 IKELKDELSLDELAGMFAPDPAAVV---LTKEEVIKRHIVSNVALQWLSDQLGDRQDVSF 117 Query: 126 EQLIHLVAVDXXXXXXXXXXXXADLLHRTLSMNRTQFGGKRWELFFARKMGVSFFLQAQA 185 QL+ L VD + + + GK EL RKMGV+ L + Sbjct: 118 GQLLSLYIVDRLLRSGEISIEEGKNIWMMFESHYPKLQGKSCELVVLRKMGVTVCLLVEE 177 Query: 186 PSELVFDEGVRLISRITLEDLTEQLQ 211 + L +EG +L++R+ + E+L+ Sbjct: 178 AAGLYVEEGAKLVARLHVPTYIEELK 203 >A4IPT8.1 A4IPT8_GEOTN Putative uncharacterized protein Length = 209 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 122/206 (59%), Gaps = 4/206 (1%) Query: 7 MEEDLISKKELLDLTGISYGQLYRWKRKQLIPESWFIRKSTYTGQETFFPKERMLGRIQH 66 M+++LISKKELL+LTGISYGQLYRWKRK+LIPE WFIRKST+TGQETFFPKE++L RI+ Sbjct: 1 MDQELISKKELLELTGISYGQLYRWKRKKLIPEDWFIRKSTFTGQETFFPKEKILARIER 60 Query: 67 IXXXXXXXXXXELAGKLS-DMSSVHKQWLTIEEVRERNIVSSITLERYGQCDRDEHKYSF 125 I ELA + D ++V LT EEV +R+IVS + + + DE SF Sbjct: 61 IKELKDERSLDELAAMFAPDPAAVV---LTKEEVVKRHIVSDVVWQWLNEQLGDEEGVSF 117 Query: 126 EQLIHLVAVDXXXXXXXXXXXXADLLHRTLSMNRTQFGGKRWELFFARKMGVSFFLQAQA 185 QL+ L VD + + + GK EL RK+GV+ + Sbjct: 118 TQLLSLYIVDRLLRSGEISVEEGKHIWKMFEHHYPALQGKTCELIVLRKIGVAVCFLLEG 177 Query: 186 PSELVFDEGVRLISRITLEDLTEQLQ 211 ++L +EGV+L++R+ + E+L+ Sbjct: 178 TADLYVEEGVKLVARLHVPTYIEELK 203 >B4BNR1.1 B4BNR1_9BACI Putative uncharacterized protein Length = 209 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 122/206 (59%), Gaps = 4/206 (1%) Query: 7 MEEDLISKKELLDLTGISYGQLYRWKRKQLIPESWFIRKSTYTGQETFFPKERMLGRIQH 66 M+++LISKKELL+LTGISYGQLYRWKRK+LIPE WFIRKST+TGQETFFPKE++L RI+ Sbjct: 1 MDQELISKKELLELTGISYGQLYRWKRKKLIPEDWFIRKSTFTGQETFFPKEKILARIER 60 Query: 67 IXXXXXXXXXXELAGKLS-DMSSVHKQWLTIEEVRERNIVSSITLERYGQCDRDEHKYSF 125 I ELA + D ++V LT EEV +R+IVS + + + DE SF Sbjct: 61 IKELKDERSLDELAAMFAPDPAAVV---LTKEEVVKRHIVSDVVWQWLNEQLGDEEGVSF 117 Query: 126 EQLIHLVAVDXXXXXXXXXXXXADLLHRTLSMNRTQFGGKRWELFFARKMGVSFFLQAQA 185 QL+ L VD + + + GK EL RK+GV+ + Sbjct: 118 TQLLSLYIVDRLLRSGEISVEEGKHIWKMFEHHYPALQGKTCELIVLRKIGVAVCFLLEG 177 Query: 186 PSELVFDEGVRLISRITLEDLTEQLQ 211 ++L +EGV+L++R+ + E+L+ Sbjct: 178 TADLYVEEGVKLVARLHVPTYIEELK 203 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,081,267,437 Number of extensions: 36038239 Number of successful extensions: 66219 Number of sequences better than 1.0e-05: 94 Number of HSP's gapped: 66123 Number of HSP's successfully gapped: 94 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)