BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0012.p (245 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIH9.1 B1DIH9_9BACL Ribosomal 5S rRNA E-loop binding protein C... 114 7e-24 C2C4D1.1 C2C4D1_LISGR 50S ribosomal protein L25/general stress p... 106 2e-21 A0T1K9.1 A0T1K9_LISIN General stress protein 103 9e-21 C1KYE4.1 C1KYE4_LISMC Putative general stress protein 103 1e-20 B8DGL4.1 B8DGL4_LISMH Ribosomal protein L25, Ctc-form 103 1e-20 >B1DIH9.1 B1DIH9_9BACL Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 Length = 217 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 1/173 (0%) Query: 47 RLTERSGSTSSQRSKGFVPVVVYGAG-SDSQSFTADAKTLNEILGKNPRAILKVELPGSG 105 R T S R G VP +VYG + S K L +L +P A++ +++PG+G Sbjct: 10 RTTTMKSELRSLRESGRVPGIVYGKQLASPASVAIQEKELLALLRTHPNAVIDLDIPGAG 69 Query: 106 SKNVVIQEVQRQPLSRKLLHVDLHQIDMKAELDTKVAFHFTGDPVGVKSGGIQQVELYEL 165 ++V+I E+QR+ LSRKL+HVD QI+M E+ T V GD G + GGI Q L+EL Sbjct: 70 KQSVMIAEIQREKLSRKLIHVDFQQINMNEEVTTHVRIDLVGDSQGEREGGIVQALLHEL 129 Query: 166 DIRTLPDKLTATFEVDISGLDVGDQLLVSDLPKHEGWEVLTPEDTLIVRIAPP 218 ++R LP + + VD++GL +G LV D+ G ++T ++V + P Sbjct: 130 EVRCLPGSIPDSIPVDVTGLLMGSSYLVGDVQAPAGVTIVTDPSAVLVTVLVP 182 >C2C4D1.1 C2C4D1_LISGR 50S ribosomal protein L25/general stress protein Ctc Length = 213 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 2/179 (1%) Query: 41 IMNTTVRLTERSGSTSSQRSKGFVPVVVYGAGSDSQSFTADAKTLNEILGKNPR-AILKV 99 +++ R T+ + + R G +P +VYG S++ + D L +++ +N R A+ V Sbjct: 10 VLDIKKRETKPHSNITEVRESGRIPAIVYGYQSENVPVSVDELDLLKLVRENGRNAVFTV 69 Query: 100 ELPGSGSKNVVIQEVQRQPLSRKLLHVDLHQIDMKAELDTKVAFHFTGDPVGVKSGGIQQ 159 L G NV++ + Q PL KL+HVDL +DMKAE++ +V G+ GVK GG+ Q Sbjct: 70 NLDGK-KVNVLLHDYQIDPLKNKLVHVDLLAVDMKAEVEAEVRIDLVGESTGVKEGGVLQ 128 Query: 160 VELYELDIRTLPDKLTATFEVDISGLDVGDQLLVSDLPKHEGWEVLTPEDTLIVRIAPP 218 L+E+ + PDKL + EVDIS L +GD + VS + + +E++T + +I + P Sbjct: 129 QVLHEVTVSATPDKLPESVEVDISELGIGDSVEVSKISTSKAFEIITDGEEVIATVTAP 187 >A0T1K9.1 A0T1K9_LISIN General stress protein Length = 207 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 6/182 (3%) Query: 42 MNTTVRLTERSGSTSSQ----RSKGFVPVVVYGAGSDSQSFTADAKTLNEILGKNPR-AI 96 M TT+ + +R + S+ RS+G VP ++YG S++ + D+ L + + N R A+ Sbjct: 1 MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAV 60 Query: 97 LKVELPGSGSKNVVIQEVQRQPLSRKLLHVDLHQIDMKAELDTKVAFHFTGDPVGVKSGG 156 V + G NV++ E Q PL L+HVDL +DM E++T V GD GVK+GG Sbjct: 61 FSVTVDGK-KLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGG 119 Query: 157 IQQVELYELDIRTLPDKLTATFEVDISGLDVGDQLLVSDLPKHEGWEVLTPEDTLIVRIA 216 + Q ++++ + P+KL T E+DIS L++GD L +DLP+++ + V E+ +V ++ Sbjct: 120 VLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVS 179 Query: 217 PP 218 P Sbjct: 180 AP 181 >C1KYE4.1 C1KYE4_LISMC Putative general stress protein Length = 207 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 6/182 (3%) Query: 42 MNTTVRLTERSGSTSSQ----RSKGFVPVVVYGAGSDSQSFTADAKTLNEILGKNPR-AI 96 M TT+ + +R + S+ RS+G VP ++YG S++ + D+ L + + N R A+ Sbjct: 1 MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAV 60 Query: 97 LKVELPGSGSKNVVIQEVQRQPLSRKLLHVDLHQIDMKAELDTKVAFHFTGDPVGVKSGG 156 V + G NV++ E Q PL L+HVDL +DM E++T V GD GVK+GG Sbjct: 61 FSVTVDGK-KLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGG 119 Query: 157 IQQVELYELDIRTLPDKLTATFEVDISGLDVGDQLLVSDLPKHEGWEVLTPEDTLIVRIA 216 + Q ++++ + P+KL T E+DIS L++GD L +DLP+++ + V E+ +V ++ Sbjct: 120 VLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVS 179 Query: 217 PP 218 P Sbjct: 180 AP 181 >B8DGL4.1 B8DGL4_LISMH Ribosomal protein L25, Ctc-form Length = 207 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 6/182 (3%) Query: 42 MNTTVRLTERSGSTSSQ----RSKGFVPVVVYGAGSDSQSFTADAKTLNEILGKNPR-AI 96 M TT+ + +R + S+ RS+G VP ++YG S++ + D+ L + + N R A+ Sbjct: 1 MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAV 60 Query: 97 LKVELPGSGSKNVVIQEVQRQPLSRKLLHVDLHQIDMKAELDTKVAFHFTGDPVGVKSGG 156 V + G NV++ E Q PL L+HVDL +DM E++T V GD GVK+GG Sbjct: 61 FSVTVDGK-KLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGG 119 Query: 157 IQQVELYELDIRTLPDKLTATFEVDISGLDVGDQLLVSDLPKHEGWEVLTPEDTLIVRIA 216 + Q ++++ + P+KL T E+DIS L++GD L +DLP+++ + V E+ +V ++ Sbjct: 120 VLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVS 179 Query: 217 PP 218 P Sbjct: 180 AP 181 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,257,923,856 Number of extensions: 50365744 Number of successful extensions: 97940 Number of sequences better than 1.0e-05: 799 Number of HSP's gapped: 97391 Number of HSP's successfully gapped: 799 Length of query: 245 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 113 Effective length of database: 1,817,122,223 Effective search space: 205334811199 Effective search space used: 205334811199 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)