BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0010.p (327 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEU5.1 B3KEU5_9BACI Oligopeptide/dipeptide ABC transporter, AT... 498 e-139 B0KBJ3.1 B0KBJ3_THEP3 Oligopeptide/dipeptide ABC transporter, AT... 457 e-127 Q8R794.1 Q8R794_THETN ABC-type dipeptide/oligopeptide/nickel tra... 451 e-125 B7R9E4.1 B7R9E4_9THEO Oligopeptide/dipeptide transporter domain ... 451 e-125 C3HCR8.1 C3HCR8_BACTU Oligopeptide ABC transporter (ATP-binding ... 440 e-122 >B3KEU5.1 B3KEU5_9BACI Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 328 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/326 (71%), Positives = 278/326 (85%) Query: 1 MKHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEA 60 M L++I LST F + G V AVD +SF++REGETVC+VGESGCGKS+TAMSIMGLVE Sbjct: 2 MNSLIEINHLSTYFESGTGTVKAVDDISFRIREGETVCVVGESGCGKSITAMSIMGLVEG 61 Query: 61 PGGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMV 120 P G+V GRI F +DLL++ K +R IRGN+I++IFQEPMSSLNPV+ IG+QIMEPLM+ Sbjct: 62 PHGKVVNGRIQFGDKDLLKISKEEMRRIRGNDISIIFQEPMSSLNPVITIGKQIMEPLML 121 Query: 121 HLKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIAD 180 H ++++KQA RA+ELI VGI+R EQI SYPH+LSGGMLQRIMIAIA+SC PKLLIAD Sbjct: 122 HRRMNQKQAYARALELIELVGISRGEQIAASYPHQLSGGMLQRIMIAIAISCGPKLLIAD 181 Query: 181 EPTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGV 240 EPTTALDVTIQAQ+L+ LRE KE S MS+LLITHDLGVVAEMADYVIVMY+G+IVEEG V Sbjct: 182 EPTTALDVTIQAQVLETLRESKEQSNMSMLLITHDLGVVAEMADYVIVMYAGKIVEEGDV 241 Query: 241 VELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCR 300 E+F+HPKHPYT+GLLKSKP++GQR E+LYSIPGQVPNPL L +SCYFHDRCE CMPVCR Sbjct: 242 EEIFDHPKHPYTKGLLKSKPIIGQRSEQLYSIPGQVPNPLELTESCYFHDRCESCMPVCR 301 Query: 301 SRQPRLKELDGGQKTACWLYEEAEVH 326 +RQP L+E++ G +TACWLYEE H Sbjct: 302 TRQPSLREVEPGHRTACWLYEEEARH 327 >B0KBJ3.1 B0KBJ3_THEP3 Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 327 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 212/320 (66%), Positives = 263/320 (82%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 K+L++ L T F+TEEG V AV+ VSF +REGETVCIVGESGCGKSVTA+S+M L+++P Sbjct: 3 KNLVEFRNLKTFFYTEEGVVKAVNDVSFSIREGETVCIVGESGCGKSVTALSLMRLIQSP 62 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G++ GG I F G D+L+L + +R IRGNEI MIFQEPM+SLNPV+ IGEQIMEPL+VH Sbjct: 63 PGKIEGGEIIFDGRDILKLSEAEMRRIRGNEIGMIFQEPMTSLNPVLTIGEQIMEPLIVH 122 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 ++KK+A +A+ELI QVGI R EQI SYPHELSGGM QRIMIAIA+SC+PKLLIADE Sbjct: 123 KLMTKKEAWNKAIELIKQVGIPRAEQIMTSYPHELSGGMRQRIMIAIALSCDPKLLIADE 182 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR+ K+ M+++LITHDLG+VAE+ADYV+VMY+G+++EE V Sbjct: 183 PTTALDVTIQAQILDLLRKIKQERNMALMLITHDLGIVAEIADYVVVMYAGKVIEEAPVR 242 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 ELF +PKHPYTRGLLK+KP++GQR E LY+IPGQVPNP+ L CYF DRCE+ M +CR Sbjct: 243 ELFKNPKHPYTRGLLKAKPIIGQRQERLYTIPGQVPNPIGLGDYCYFSDRCEYAMDICRQ 302 Query: 302 RQPRLKELDGGQKTACWLYE 321 + P+L + G K ACWLYE Sbjct: 303 KIPQLAADENGHKVACWLYE 322 >Q8R794.1 Q8R794_THETN ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 327 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/320 (65%), Positives = 260/320 (81%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 +++++ L T F+TEEG V AV+ VSF +REGETVC+VGESGCGKSVTA+S+M L+++P Sbjct: 3 RNIVEFRNLKTYFYTEEGVVKAVNDVSFSIREGETVCVVGESGCGKSVTALSLMRLIQSP 62 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G++ GG I F G D+L+L +R IRGNEI MIFQEPM+SLNPV+ IG+Q+MEPLM+H Sbjct: 63 PGKIVGGEIIFDGRDILKLSDAEMRRIRGNEIGMIFQEPMTSLNPVLTIGDQLMEPLMLH 122 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 ++KK+A +A+ELI QVGI R EQI SYPHELSGGM QRIMIA+A+SC+PKLLIADE Sbjct: 123 KHMTKKEAWNKAIELIKQVGIPRAEQIMTSYPHELSGGMRQRIMIAMAISCDPKLLIADE 182 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR KE M+++LITHDLG+VAEMADYV+VMY+G+++EE V Sbjct: 183 PTTALDVTIQAQILDLLRRLKEEKKMALMLITHDLGIVAEMADYVVVMYAGKVIEEAPVR 242 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 ELF +PKHPYTRGLLK+KPV+G+R E LY+IPGQVPNP+ L CYF DRCE+ M VCR Sbjct: 243 ELFKNPKHPYTRGLLKAKPVIGRRQERLYTIPGQVPNPIDLGDFCYFSDRCEYTMDVCRK 302 Query: 302 RQPRLKELDGGQKTACWLYE 321 + P L + G K ACWLYE Sbjct: 303 KMPPLVADENGHKVACWLYE 322 >B7R9E4.1 B7R9E4_9THEO Oligopeptide/dipeptide transporter domain family protein Length = 327 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/320 (65%), Positives = 260/320 (81%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 +++++ L T F+TEEG V AV+ VSF +REGETVC+VGESGCGKSVTA+S+M L+++P Sbjct: 3 RNIVEFRNLKTYFYTEEGVVKAVNDVSFSIREGETVCVVGESGCGKSVTALSLMRLIQSP 62 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G++ GG I F G D+L+L +R IRGNEI MIFQEPM+SLNPV+ IG+Q+MEPLM+H Sbjct: 63 PGKIVGGEIIFDGRDILKLSDAEMRRIRGNEIGMIFQEPMTSLNPVLTIGDQLMEPLMLH 122 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 ++KK+A +A+ELI QVGI R EQI SYPHELSGGM QRIMIA+A+SC+PKLLIADE Sbjct: 123 KHMTKKEAWNKAIELIKQVGIPRAEQIMTSYPHELSGGMRQRIMIAMAISCDPKLLIADE 182 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR KE M+++LITHDLG+VAEMADYV+VMY+G+++EE V Sbjct: 183 PTTALDVTIQAQILDLLRRLKEEKKMALMLITHDLGIVAEMADYVVVMYAGKVIEEAPVR 242 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 ELF +PKHPYTRGLLK+KPV+G+R E LY+IPGQVPNP+ L CYF DRCE+ M VCR Sbjct: 243 ELFKNPKHPYTRGLLKAKPVIGRRQERLYTIPGQVPNPIDLGDFCYFSDRCEYTMDVCRK 302 Query: 302 RQPRLKELDGGQKTACWLYE 321 + P L + G K ACWLYE Sbjct: 303 KMPPLVADENGHKVACWLYE 322 >C3HCR8.1 C3HCR8_BACTU Oligopeptide ABC transporter (ATP-binding protein) Length = 326 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/321 (66%), Positives = 259/321 (80%), Gaps = 1/321 (0%) Query: 2 KHLMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAP 61 K +++++ L T F TEEG V AV+ VSF VREGETVC+VGESGCGKSVTA+SIMGL+ A Sbjct: 3 KAVVELKDLQTHFQTEEGTVKAVNHVSFSVREGETVCVVGESGCGKSVTALSIMGLI-AE 61 Query: 62 GGQVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVH 121 G V GG I + G+ LL + + LR++RGN+IAMIFQEPM+SLNPV +GEQI+E L H Sbjct: 62 SGSVVGGDILYEGKSLLGMKEKELRSLRGNDIAMIFQEPMTSLNPVFTVGEQIVETLREH 121 Query: 122 LKLSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADE 181 LSK +A +A+ELI +VGIAR E+I SYPHELSGGMLQRIMIA+A+SCNPKLLIADE Sbjct: 122 ELLSKNEAYKKAIELIRKVGIARAEEIVHSYPHELSGGMLQRIMIAVALSCNPKLLIADE 181 Query: 182 PTTALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVV 241 PTTALDVTIQAQILD+LR+ KE SILLITHDLGVVAEMADYV+VMY G+++EE V+ Sbjct: 182 PTTALDVTIQAQILDLLRQVKEEFKTSILLITHDLGVVAEMADYVVVMYGGKVIEEAPVL 241 Query: 242 ELFNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRS 301 E+F +PKHPYT+GLLKSKPV+G+R+++LYSIPGQVPN + L++ CYF RCEHCM +C+ Sbjct: 242 EIFQNPKHPYTKGLLKSKPVMGKRIDKLYSIPGQVPNLVGLDEFCYFSGRCEHCMEICKE 301 Query: 302 RQPRLKELDGGQKTACWLYEE 322 P L D K ACWLYEE Sbjct: 302 EAPSLNVHDENHKIACWLYEE 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,906,419,072 Number of extensions: 77732911 Number of successful extensions: 502885 Number of sequences better than 1.0e-05: 81386 Number of HSP's gapped: 407146 Number of HSP's successfully gapped: 87288 Length of query: 327 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 191 Effective length of database: 1,779,438,163 Effective search space: 339872689133 Effective search space used: 339872689133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)