BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0009.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJM8.1 C0ZJM8_BREBN ABC transporter permease protein 452 e-125 B3KEU4.1 B3KEU4_9BACI Binding-protein-dependent transport system... 441 e-122 Q6HPF8.1 Q6HPF8_BACHK Oligopeptide ABC transporter, permease 422 e-116 C2TAQ0.1 C2TAQ0_BACCE Binding-protein-dependent transport system... 422 e-116 C2XNF9.1 C2XNF9_BACCE Binding-protein-dependent transport system... 422 e-116 >C0ZJM8.1 C0ZJM8_BREBN ABC transporter permease protein Length = 308 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/301 (72%), Positives = 253/301 (84%) Query: 1 LAGLREPQVQRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINM 60 +A + P+ +SSL+ ++ RL K RL M CFIGPFFSPYA KIN Sbjct: 8 VAEVTRPEQVTLRSSLWHEAFLRLKKKRLAMVGLVFLLVMAVGCFIGPFFSPYASGKINT 67 Query: 61 AMMNKAPSLQHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRG 120 AM+NK PS H LGTD+LGRDILTR+MQAGRISLTVG+ASMVLSV IGALLGA+AG+YRG Sbjct: 68 AMINKPPSFSHWLGTDSLGRDILTRLMQAGRISLTVGIASMVLSVSIGALLGALAGFYRG 127 Query: 121 IADQIIMRIADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVR 180 DQ+IMR+AD+LMTIPGLPLLFI GA+LSEWK+PTDYR+YIVM+MLS++ WPGLARMVR Sbjct: 128 WVDQVIMRVADVLMTIPGLPLLFIMGAVLSEWKIPTDYRIYIVMVMLSLIGWPGLARMVR 187 Query: 181 GQMLSLREREFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFG 240 QML+LRE EFMQAA VLGLRD RKLF HLLPN+ PLLIV+ATLN+GGAILSESVLS+FG Sbjct: 188 SQMLTLRESEFMQAAEVLGLRDRRKLFFHLLPNLTPLLIVVATLNVGGAILSESVLSYFG 247 Query: 241 LGVMPPTPTWGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQK 300 LGV+PPTPTWGNM+DAAN +IDFQ PWLW+PPG++IFATVI+IN+ GDGLRD LDPKQK Sbjct: 248 LGVVPPTPTWGNMMDAANTLIDFQKRPWLWVPPGIAIFATVISINLLGDGLRDALDPKQK 307 Query: 301 R 301 R Sbjct: 308 R 308 >B3KEU4.1 B3KEU4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/287 (74%), Positives = 245/287 (85%) Query: 14 SSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMNKAPSLQHLL 73 SL++QS ++L KN+L MF CFIGP FSPYAD KIN AMM+K PS +H L Sbjct: 21 DSLWKQSTRQLRKNKLAVAGFAFIVLMFVACFIGPLFSPYADGKINPAMMHKPPSGKHWL 80 Query: 74 GTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQIIMRIADLL 133 GTD LGRD+LTR++QAGRISLTVGLASM LS+ IG +LG ++GYYRG+ DQ+IMR ADLL Sbjct: 81 GTDLLGRDVLTRLLQAGRISLTVGLASMALSMTIGTVLGVISGYYRGVVDQLIMRTADLL 140 Query: 134 MTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQMLSLREREFMQ 193 TIPGLP+LFI GAL+S+WKVPTDYR+Y+VMLMLSI+ WPG+AR+VR QML+LRERE+M Sbjct: 141 FTIPGLPILFIMGALMSDWKVPTDYRLYLVMLMLSIIGWPGVARLVRSQMLTLREREYML 200 Query: 194 AAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVMPPTPTWGNM 253 AA VLGL D RKLF HLLPNV PLLIV+ATL+IGGAILSESVLSFFGLGVMPPTPTWGNM Sbjct: 201 AADVLGLSDKRKLFRHLLPNVFPLLIVIATLSIGGAILSESVLSFFGLGVMPPTPTWGNM 260 Query: 254 IDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQK 300 IDAANN+IDF+ PWLWIPPGL+IF TVIAINIFGDGLRDVLDPKQ Sbjct: 261 IDAANNVIDFEKRPWLWIPPGLAIFLTVIAINIFGDGLRDVLDPKQN 307 >Q6HPF8.1 Q6HPF8_BACHK Oligopeptide ABC transporter, permease Length = 307 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 193/297 (64%), Positives = 248/297 (83%) Query: 5 REPQVQRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMN 64 +E + +R +SS +RQ+LK++ KN++ MF CFIGPFFSPYA KI +A++N Sbjct: 11 KEKKRRRNESSPWRQALKKIKKNKMALVGLYALIFMFLFCFIGPFFSPYASGKIQVALIN 70 Query: 65 KAPSLQHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQ 124 K PS H LGTD LGRDILTR+MQAGRISLT+GLASMVLSV +GA+LGA+AG+YRGI D Sbjct: 71 KPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVILGAVLGAIAGFYRGIVDN 130 Query: 125 IIMRIADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQML 184 IIMR+AD+LM++PGLPLL I GA+LSEWKVP+DYR+Y++M++LS+V WPGLAR+VRGQ+L Sbjct: 131 IIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYVIMIILSLVGWPGLARLVRGQIL 190 Query: 185 SLREREFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVM 244 SLRE+ FMQAA VLG++D RK+ +HL+PNV+P+LIV++TL + G+IL ES LS+ GLGV+ Sbjct: 191 SLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVV 250 Query: 245 PPTPTWGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQKR 301 PPTP+WGNMI AAN++IDFQ PWLWIPPG +IF TV++IN+ GD LRD LDPK +R Sbjct: 251 PPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 307 >C2TAQ0.1 C2TAQ0_BACCE Binding-protein-dependent transport system inner membrane component Length = 307 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 193/297 (64%), Positives = 248/297 (83%) Query: 5 REPQVQRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMN 64 +E + +R +SS +RQ+LK++ KN++ MF CFIGPFFSPYA KI +A++N Sbjct: 11 KEKKRRRNESSPWRQALKKIKKNKMALVGLYALIFMFLFCFIGPFFSPYASGKIQVALIN 70 Query: 65 KAPSLQHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQ 124 K PS H LGTD LGRDILTR+MQAGRISLT+GLASMVLSV +GA+LGA+AG+YRGI D Sbjct: 71 KPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVILGAVLGAIAGFYRGIVDN 130 Query: 125 IIMRIADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQML 184 IIMR+AD+LM++PGLPLL I GA+LSEWKVP+DYR+Y++M++LS+V WPGLAR+VRGQ+L Sbjct: 131 IIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYVIMIILSLVGWPGLARLVRGQIL 190 Query: 185 SLREREFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVM 244 SLRE+ FMQAA VLG++D RK+ +HL+PNV+P+LIV++TL + G+IL ES LS+ GLGV+ Sbjct: 191 SLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVV 250 Query: 245 PPTPTWGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQKR 301 PPTP+WGNMI AAN++IDFQ PWLWIPPG +IF TV++IN+ GD LRD LDPK +R Sbjct: 251 PPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 307 >C2XNF9.1 C2XNF9_BACCE Binding-protein-dependent transport system inner membrane component Length = 307 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 194/297 (65%), Positives = 246/297 (82%) Query: 5 REPQVQRQKSSLFRQSLKRLMKNRLXXXXXXXXXXMFALCFIGPFFSPYADNKINMAMMN 64 + + +R +SS +RQ+ KR+ KN++ MF CFIGPFFSPYA KI +A++N Sbjct: 11 KAKKKRRNESSPWRQAFKRIKKNKMALIGFYALVFMFLFCFIGPFFSPYASGKIQVALIN 70 Query: 65 KAPSLQHLLGTDALGRDILTRVMQAGRISLTVGLASMVLSVFIGALLGAVAGYYRGIADQ 124 K PS H LGTD LGRDILTR+MQAGRISLT+GLASMVLSV +GALLGA+AG+YRGI D Sbjct: 71 KPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVILGALLGAIAGFYRGIVDN 130 Query: 125 IIMRIADLLMTIPGLPLLFIFGALLSEWKVPTDYRMYIVMLMLSIVNWPGLARMVRGQML 184 IIMR+AD+LM++PGLPLL I GA+LSEWKVP+DYR+Y++M++LS+V WPGLAR+VRGQ+L Sbjct: 131 IIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYVIMIILSLVGWPGLARLVRGQIL 190 Query: 185 SLREREFMQAAVVLGLRDSRKLFHHLLPNVVPLLIVMATLNIGGAILSESVLSFFGLGVM 244 SLRE+ FMQAA VLG++D RK+ +HL+PNV+P+LIV++TL + G+IL ES LS+ GLGV+ Sbjct: 191 SLREQSFMQAADVLGIKDYRKIVYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVV 250 Query: 245 PPTPTWGNMIDAANNMIDFQDHPWLWIPPGLSIFATVIAINIFGDGLRDVLDPKQKR 301 PPTP+WGNMI AAN++IDFQ PWLWIPPG +IF TV++IN+ GD LRD LDPK KR Sbjct: 251 PPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMKR 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,623,586,872 Number of extensions: 61801614 Number of successful extensions: 252624 Number of sequences better than 1.0e-05: 6584 Number of HSP's gapped: 241973 Number of HSP's successfully gapped: 6598 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)