BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0007.p (171 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEU3.1 B3KEU3_9BACI Binding-protein-dependent transport system... 240 4e-62 C0ZJM9.1 C0ZJM9_BREBN ABC transporter permease protein 204 2e-51 Q73EV9.1 Q73EV9_BACC1 Oligopeptide ABC transporter, permease pro... 204 2e-51 Q81VH2.1 Q81VH2_BACAN Oligopeptide ABC transporter, permease pro... 203 4e-51 Q63GY6.1 Q63GY6_BACCZ Oligopeptide ABC transporter, permease 203 4e-51 >B3KEU3.1 B3KEU3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 317 Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/168 (68%), Positives = 131/168 (77%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M TYL +R LYM Y+ TPGD++ N+ L+ ERKAELREI+GLNKPV+ Sbjct: 1 MRTYLLRRCLYMLLILIGASLLIFFLYSLTPGDYVDNNLSLSEERKAELREIHGLNKPVI 60 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 ERY WM N F GDFGYSLAQQ+PVL LF DYIWNSF+LA VSTF TW IAV+VGVI+AY Sbjct: 61 ERYVNWMANIFTGDFGYSLAQQRPVLDLFQDYIWNSFVLAVVSTFFTWFIAVVVGVITAY 120 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVITT 168 KQYS DTLVM+ IFAAMS+PSFFIGLFLIK+ AVDLK LPPGG+ITT Sbjct: 121 KQYSLLDTLVMIGIFAAMSIPSFFIGLFLIKVFAVDLKILPPGGMITT 168 >C0ZJM9.1 C0ZJM9_BREBN ABC transporter permease protein Length = 318 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 95/166 (57%), Positives = 119/166 (71%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M++Y KR+ YM YA TPGDF+ ++KLTAERK EL+ +YGL+KPV+ Sbjct: 1 MTSYFLKRVFYMALTLFGASILIFFLYALTPGDFVDTSLKLTAERKLELKAMYGLDKPVV 60 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 ERY WM NA GDFGYSL Q+PV+ L NDYIWNSFLLA STF TW+IA+ +GV+SA Sbjct: 61 ERYFIWMKNALQGDFGYSLQYQQPVMSLLNDYIWNSFLLAITSTFFTWLIAISIGVLSAA 120 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVI 166 +Q+SWFD LV + +FAAMSLP FF+GL IK+ AVD K P GG++ Sbjct: 121 RQHSWFDALVTIGVFAAMSLPVFFVGLLFIKLFAVDAKLFPAGGMM 166 >Q73EV9.1 Q73EV9_BACC1 Oligopeptide ABC transporter, permease protein Length = 318 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 97/166 (58%), Positives = 119/166 (71%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M TY+ +R L M +A PGD+I N KLT ER ELRE+YGLNKP++ Sbjct: 1 MKTYIIRRFLQMIPTLFGTSIIIFFLFALLPGDYIDSNPKLTPERAQELRELYGLNKPII 60 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 ERY W+ NA HGDFG+SL Q+PV L N +IWN+F++A + F TW+IA+I+GVISA Sbjct: 61 ERYFHWLVNALHGDFGFSLQYQEPVTSLLNKFIWNTFIVAVAALFFTWIIALIIGVISAT 120 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVI 166 KQ+SWFD LV + IFAAMS PSFFIGLFLIK+LAVDLK LP GG+I Sbjct: 121 KQHSWFDRLVTIGIFAAMSFPSFFIGLFLIKLLAVDLKLLPIGGMI 166 >Q81VH2.1 Q81VH2_BACAN Oligopeptide ABC transporter, permease protein Length = 318 Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/166 (57%), Positives = 119/166 (71%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M TY+ +R L M +A PGD+I N KLT ER ELRE+YGLNKP++ Sbjct: 1 MKTYIIRRFLQMIPTLFGTSIIIFFLFALLPGDYIDSNPKLTPERAQELRELYGLNKPII 60 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 ERY W+ NA HGDFG+SL Q+PV L N +IWN+F++A + F TW+IA+I+GVISA Sbjct: 61 ERYFHWLVNALHGDFGFSLQYQEPVTSLLNKFIWNTFIVAVAALFFTWIIALIIGVISAT 120 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVI 166 KQ+SWFD LV + +FAAMS PSFFIGLFLIK+LAVDLK LP GG+I Sbjct: 121 KQHSWFDRLVTIGVFAAMSFPSFFIGLFLIKLLAVDLKLLPIGGMI 166 >Q63GY6.1 Q63GY6_BACCZ Oligopeptide ABC transporter, permease Length = 318 Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/166 (57%), Positives = 119/166 (71%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M TY+ +R L M +A PGD+I N KLT ER ELRE+YGLNKP++ Sbjct: 1 MKTYIIRRFLQMIPTLFGTSIIIFFLFALLPGDYIDSNPKLTPERAQELRELYGLNKPII 60 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 ERY W+ NA HGDFG+SL Q+PV L N +IWN+F++A + F TW+IA+I+GVISA Sbjct: 61 ERYFHWLVNALHGDFGFSLQYQEPVTSLLNKFIWNTFIVAVAALFFTWIIALIIGVISAT 120 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVI 166 KQ+SWFD LV + +FAAMS PSFFIGLFLIK+LAVDLK LP GG+I Sbjct: 121 KQHSWFDRLVTIGVFAAMSFPSFFIGLFLIKLLAVDLKLLPIGGMI 166 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 955,063,145 Number of extensions: 35520862 Number of successful extensions: 152885 Number of sequences better than 1.0e-05: 4614 Number of HSP's gapped: 151825 Number of HSP's successfully gapped: 4614 Length of query: 171 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 45 Effective length of database: 1,873,648,313 Effective search space: 84314174085 Effective search space used: 84314174085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)