BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0006.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEU2.1 B3KEU2_9BACI Extracellular solute-binding protein family 5   134   2e-30
C0ZJN0.1 C0ZJN0_BREBN ABC transporter substrate binding protein        95   2e-18
C2PQ82.1 C2PQ82_BACCE Oligopeptide transporter, periplasmic-bind...    94   5e-18
Q4MPW1.1 Q4MPW1_BACCE Oligopeptide ABC transporter, oligopeptide...    92   2e-17
C2QMC3.1 C2QMC3_BACCE Oligopeptide transporter, periplasmic-bind...    92   2e-17

>B3KEU2.1 B3KEU2_9BACI Extracellular solute-binding protein family 5
          Length = 582

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 82/112 (73%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFFDGEITDYDNPKFLELYNKALATTDIEQRKA 60
           VSKV  GDYD+ SFST++++DP+ G  +F  GE   YDNP+  ELY + LAT D+E+RKA
Sbjct: 471 VSKVNSGDYDMASFSTTIISDPSQGVERFIKGETKGYDNPRIEELYAQGLATDDVEERKA 530

Query: 61  VYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSPFIGLAGSLPEWTLK 112
           +Y E++++ NDELPI+FT+Y K+V A NGRI    ++P  G+A SLP W L+
Sbjct: 531 IYHEMFKILNDELPIMFTNYTKSVIAINGRIDGFELNPLAGIAYSLPGWNLQ 582


>C0ZJN0.1 C0ZJN0_BREBN ABC transporter substrate binding protein
          Length = 582

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 9/115 (7%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQF--------FDGEITDYDNPKFLELYNKALAT 52
           +++ E GD+DL SFST+ML DP DG   F        F G    Y N K  EL    L+T
Sbjct: 464 LARTEKGDHDLASFSTTMLIDPDDGVDAFSTKKGKSGFTG-TNGYSNAKVDELLEAGLST 522

Query: 53  TDIEQRKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSPFIGLAGSLP 107
            DIE+RKA+YK+LY+  +D+ P +   Y+K + A+NG+I+ L  +PF G++ SLP
Sbjct: 523 LDIEKRKAIYKDLYKELSDDPPYILLGYRKILSAHNGKIKGLEPNPFTGISTSLP 577


>C2PQ82.1 C2PQ82_BACCE Oligopeptide transporter, periplasmic-binding protein
          Length = 578

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFFDGEI---TDYDNPKFLELYNKALATTDIEQ 57
           +SKV  GDYDL + ST  ++DP++    +        T Y NPK  EL  K + TTDIE+
Sbjct: 463 LSKVGKGDYDLAAVSTPGISDPSEVVSDYLSTNPKSDTGYSNPKVDELIVKGIETTDIEK 522

Query: 58  RKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSPFIGLAGSLP 107
           RKAVYKELY+  +D+ P++  +Y+K +YA+N RIQ +    + G++ +LP
Sbjct: 523 RKAVYKELYKELSDDPPVILLNYRKLLYAHNARIQGINPEKYDGISSNLP 572


>Q4MPW1.1 Q4MPW1_BACCE Oligopeptide ABC transporter, oligopeptide-binding
           protein, putative
          Length = 575

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFFDGEI---TDYDNPKFLELYNKALATTDIEQ 57
           +SKV  GDYDL + ST  ++DP++   ++        T Y+NPK  +L  K + TTDIE+
Sbjct: 460 LSKVGKGDYDLAAVSTPGISDPSEVVSEYLSTNPKSDTGYNNPKVDDLIVKGIGTTDIEK 519

Query: 58  RKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSPFIGLAGSLP 107
           RKA+YKELY+  +D+ P++  +Y+K +YA+N RI+ +    + G++ +LP
Sbjct: 520 RKAIYKELYKELSDDPPVILLNYRKLLYAHNARIKGIDPEKYDGISSNLP 569


>C2QMC3.1 C2QMC3_BACCE Oligopeptide transporter, periplasmic-binding protein
          Length = 578

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFFDGEI---TDYDNPKFLELYNKALATTDIEQ 57
           +SKV  GDYDL + ST  ++DP++   ++        T Y+NPK  +L  K + TTDIE+
Sbjct: 463 LSKVGKGDYDLAAVSTPGISDPSEVVSEYLSTNPKSDTGYNNPKVDDLIVKGIGTTDIEK 522

Query: 58  RKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSPFIGLAGSLP 107
           RKA+YKELY+  +D+ P++  +Y+K +YA+N RI+ +    + G++ +LP
Sbjct: 523 RKAIYKELYKELSDDPPVILLNYRKLLYAHNARIKGIDPEKYDGISSNLP 572


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 709,055,082
Number of extensions: 26731195
Number of successful extensions: 70866
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 70785
Number of HSP's successfully gapped: 108
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)