BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0005.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEU2.1 B3KEU2_9BACI Extracellular solute-binding protein family 5 519 e-145 C0ZJN0.1 C0ZJN0_BREBN ABC transporter substrate binding protein 450 e-124 A9VQD0.1 A9VQD0_BACWK Extracellular solute-binding protein family 5 431 e-118 C2SEG3.1 C2SEG3_BACCE Oligopeptide transporter, periplasmic-bind... 431 e-118 C2W348.1 C2W348_BACCE Oligopeptide transporter, periplasmic-bind... 430 e-118 >B3KEU2.1 B3KEU2_9BACI Extracellular solute-binding protein family 5 Length = 582 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/398 (63%), Positives = 309/398 (77%), Gaps = 14/398 (3%) Query: 22 CSDNSSNSATGNAP-----ASATSDPGTTGTEXXXXXXXXXXXXXXEPFTAADLSKLPAV 76 CS S+N T +P A+A+S+P GTE EPF A DL+KLP Sbjct: 24 CSSGSANKETAASPPTTPEANASSEPAEQGTEGHLLE---------EPFAATDLNKLPDR 74 Query: 77 AQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDKGVPTPELAESWDVS 136 A+ RND IIV L +PSGAFTPYF + GYDGNV+S+LY L+ VD G+P P LAE W++S Sbjct: 75 AKQRNDAIIVTLVNPSGAFTPYFTQVGYDGNVNSVLYTPLIRVDTDGLPVPGLAEKWEIS 134 Query: 137 DDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVPSMNVKGGKAYKEGT 196 +D+LTYT+HLR+ LK+SDGSP+T +DV FTWT+ +D +YDG +SV +KGG+AYK+G Sbjct: 135 EDKLTYTYHLREGLKYSDGSPMTTEDVEFTWTLLHDPSYDGLNSVVEAKIKGGQAYKDGK 194 Query: 197 AKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTFGHLEYIKKLHEHPL 256 A +IEGI++ID +TISVTLE+ NATAL LG +LSKAYYGKDY FG+L+YIK LH +P+ Sbjct: 195 ADSIEGIQIIDERTISVTLEETNATALTVLGGPILSKAYYGKDYQFGNLDYIKNLHANPI 254 Query: 257 GDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDVWQFLETGEVDYASFSAT 316 +GPYKLEKF+PGQEVRF ANE+Y GKP+TE+FIYKT+EGD WQF+ETGEVDY SFSAT Sbjct: 255 TNGPYKLEKFIPGQEVRFVANEHYVLGKPETEYFIYKTTEGDTWQFIETGEVDYGSFSAT 314 Query: 317 DENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAIMYGLDRQSIYVDAAQG 376 +NIEKLKALGF+N++P T S YGY Q NL+ + LKDK VRQA+ YGL+RQ IYVD+ QG Sbjct: 315 TDNIEKLKALGFLNLIPSTASNYGYNQFNLERDPLKDKRVRQALTYGLNRQLIYVDSRQG 374 Query: 377 AGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 A SIANIP+SPI W+YTEE INPY YDPEKAKQLLD+A Sbjct: 375 AASIANIPSSPILWSYTEEDINPYPYDPEKAKQLLDEA 412 >C0ZJN0.1 C0ZJN0_BREBN ABC transporter substrate binding protein Length = 582 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/348 (62%), Positives = 263/348 (75%), Gaps = 1/348 (0%) Query: 67 AADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDKGVPT 126 A DLSKLP A R DT I GLT+P G F P+F +GYDGNV+S ++ SLV VD G P Sbjct: 60 ATDLSKLPEAAAKRTDTFIAGLTEPGGVFNPFFYHNGYDGNVTSAIFESLVDVDATGKPV 119 Query: 127 PELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVPSMNV 186 P+LAE WDVS DQLTYTFHLR +LKFSDGSPLTA+DVAFT TI +DK YDG + + ++ Sbjct: 120 PKLAEKWDVSPDQLTYTFHLRPNLKFSDGSPLTAEDVAFTLTILHDKTYDGETDIFVASI 179 Query: 187 KGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTFGHLE 246 KGG+ YKE A TIEGIKVIDPQ I +T EK NA +LV LG VLSKAYYGK+Y G+LE Sbjct: 180 KGGREYKERKANTIEGIKVIDPQKIQITTEKVNAKSLVLLGGQVLSKAYYGKEYKPGNLE 239 Query: 247 YIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDVWQFLETG 306 Y++ LH PLG GPYKLE ++PGQEVR+ ANE+Y+KGKP+ EHFIYKT+EGD QF++TG Sbjct: 240 YLRTLHGKPLGAGPYKLEAYIPGQEVRYLANEHYYKGKPQVEHFIYKTTEGDALQFIQTG 299 Query: 307 EVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAIMYGLDR 366 E+DY SF+ +NIE+L+ LG+VNI YT S Y Y++ N KDK VRQA +YGLDR Sbjct: 300 EMDYNSFTVNSDNIEQLQELGYVNINLYTSSAYSYIKFNHSKPFFKDKRVRQAFIYGLDR 359 Query: 367 QSIYVDAAQGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 Q I QG +AN+P SP+SWAYTE+ +NPY Y+PEKAKQLLD+A Sbjct: 360 QKILDLTYQGYAQVANVPISPVSWAYTED-VNPYAYNPEKAKQLLDEA 406 >A9VQD0.1 A9VQD0_BACWK Extracellular solute-binding protein family 5 Length = 575 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/355 (59%), Positives = 266/355 (74%), Gaps = 4/355 (1%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E A D +K+P A+NR DT++VG++ P G F PYFQ++G+DGNV+S+++ASLV+ D + Sbjct: 48 ENIAATDKTKVPDKAKNRKDTLVVGISKPGGVFLPYFQQNGWDGNVTSVIFASLVSTDKQ 107 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 G PTPELAE WD+S DQLTYTFHLRKDLKFSDGSPLTADDVAFT T+ +DKAY+G + Sbjct: 108 GKPTPELAEKWDISSDQLTYTFHLRKDLKFSDGSPLTADDVAFTLTLLHDKAYEGDKDIS 167 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 VKGGK YKEG A +IEGI+V+DPQTI +T EK N+ AL LG VLSKAYYGKDY Sbjct: 168 QYAVKGGKEYKEGKATSIEGIQVVDPQTIKITTEKVNSQALTALGGEVLSKAYYGKDYKQ 227 Query: 243 G-HLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-W 300 L+Y+K L+E P+ GPYK EK++PGQEVRF ANENY+ GKPK +FIYK + GD Sbjct: 228 NTSLDYLKALYEKPIAAGPYKFEKYIPGQEVRFVANENYYAGKPKIPNFIYKITSGDTKL 287 Query: 301 QFLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAI 360 Q +TGEVDY DE +E+ KAL F NI T +++ Y+ +N LKDK+VRQA+ Sbjct: 288 QLFQTGEVDYTGLGTGDEVLEQAKALEFANIQIETAASFSYIYMNNNKPYLKDKKVRQAL 347 Query: 361 MYGLDRQSIYVDAA-QGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 +YGLDR+ YVD A +G G++AN+P P SWAYTEEG+N Y+YD EKAK+LLD+A Sbjct: 348 IYGLDRKK-YVDTALKGYGTVANVPIHPTSWAYTEEGVNKYEYDKEKAKKLLDEA 401 >C2SEG3.1 C2SEG3_BACCE Oligopeptide transporter, periplasmic-binding protein Length = 578 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/355 (59%), Positives = 266/355 (74%), Gaps = 4/355 (1%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E A D +K+P A+NR DT++VG++ P G F PYFQ++G+DGNV+S+++ASLV+ D + Sbjct: 51 ENIAATDKTKVPDKAKNRKDTLVVGISKPGGVFLPYFQQNGWDGNVTSVIFASLVSTDKQ 110 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 G PTPELAE WD+S DQLTYTFHLRKDLKFSDGSPLTADDVAFT T+ +DKAY+G + Sbjct: 111 GKPTPELAEKWDISSDQLTYTFHLRKDLKFSDGSPLTADDVAFTLTLLHDKAYEGDKDIS 170 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 VKGGK YKEG A +IEGI+V+DPQTI +T EK N+ AL LG VLSKAYYGKDY Sbjct: 171 QYAVKGGKEYKEGKATSIEGIQVVDPQTIKITTEKVNSQALTALGGEVLSKAYYGKDYKQ 230 Query: 243 G-HLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-W 300 L+Y+K L+E P+ GPYK EK++PGQEVRF ANENY+ GKPK +FIYK + GD Sbjct: 231 NTSLDYLKALYEKPIAAGPYKFEKYIPGQEVRFVANENYYAGKPKIPNFIYKITSGDTKL 290 Query: 301 QFLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAI 360 Q +TGEVDY DE +E+ KAL F NI T +++ Y+ +N LKDK+VRQA+ Sbjct: 291 QLFQTGEVDYTGLGTGDEVLEQAKALEFANIQIETAASFSYIYMNNNKPYLKDKKVRQAL 350 Query: 361 MYGLDRQSIYVDAA-QGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 +YGLDR+ YVD A +G G++AN+P P SWAYTEEG+N Y+YD EKAK+LLD+A Sbjct: 351 IYGLDRKK-YVDTALKGYGTVANVPIHPTSWAYTEEGVNKYEYDKEKAKKLLDEA 404 >C2W348.1 C2W348_BACCE Oligopeptide transporter, periplasmic-binding protein Length = 555 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/355 (60%), Positives = 269/355 (75%), Gaps = 4/355 (1%) Query: 63 EPFTAADLSKLPAVAQNRNDTIIVGLTDPSGAFTPYFQESGYDGNVSSLLYASLVTVDDK 122 E TA D SK P A+ R DT+IVG++ P G F PYFQE+G+DGNV+S+++ASLV+ D + Sbjct: 28 EKVTATDKSKNPEKAKQRKDTLIVGISKPGGVFLPYFQENGWDGNVTSVIFASLVSTDKQ 87 Query: 123 GVPTPELAESWDVSDDQLTYTFHLRKDLKFSDGSPLTADDVAFTWTIQYDKAYDGGSSVP 182 G P PELAE WDVS DQL YTFHLRKDLKFSDGSPLTADDVAFT T+ +DKAY+GG+ + Sbjct: 88 GKPVPELAEKWDVSSDQLKYTFHLRKDLKFSDGSPLTADDVAFTLTLLHDKAYEGGADIL 147 Query: 183 SMNVKGGKAYKEGTAKTIEGIKVIDPQTISVTLEKPNATALVTLGSNVLSKAYYGKDYTF 242 +KGGK YKEG A +IEGIKV+DPQTI +T EK N+ AL LG +VLSKAYYGKDY Sbjct: 148 QYAIKGGKDYKEGKATSIEGIKVVDPQTIEITTEKVNSQALTALGGSVLSKAYYGKDYKQ 207 Query: 243 G-HLEYIKKLHEHPLGDGPYKLEKFLPGQEVRFTANENYFKGKPKTEHFIYKTSEGDV-W 300 L+Y+K L+ P+ GPYK EK++PGQEVRF ANE+Y+ GKPK ++FIYK + D + Sbjct: 208 NTSLDYLKDLYGKPIAAGPYKFEKYVPGQEVRFVANEHYYAGKPKVKNFIYKITSPDTNF 267 Query: 301 QFLETGEVDYASFSATDENIEKLKALGFVNILPYTPSTYGYMQVNLKHEQLKDKEVRQAI 360 Q +TGE DY F+A ++NIE+LK+LGF N T S+Y Y+ +N K LKDK+VRQA+ Sbjct: 268 QLFQTGETDYDGFAANNDNIEQLKSLGFANFNIETVSSYSYIYMNNKKPYLKDKKVRQAL 327 Query: 361 MYGLDRQSIYVDAA-QGAGSIANIPASPISWAYTEEGINPYKYDPEKAKQLLDQA 414 +YGLDR+ YVD QG S+ANIP SP SWAY ++ INPY+Y+ EKAK+LLD+A Sbjct: 328 IYGLDRKK-YVDTNFQGNASVANIPISPTSWAYDDKDINPYEYNLEKAKKLLDEA 381 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,727,588,460 Number of extensions: 116929768 Number of successful extensions: 227719 Number of sequences better than 1.0e-05: 6708 Number of HSP's gapped: 217004 Number of HSP's successfully gapped: 6726 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)