BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0004.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEU7.1 B3KEU7_9BACI Regulatory protein ArsR 295 4e-78 Q9K7Z5.1 Q9K7Z5_BACHD BH3212 protein 169 3e-40 C0Z6G9.1 C0Z6G9_BREBN Probable transcriptional regulator 165 4e-39 C3FW28.1 C3FW28_BACTB Putative uncharacterized protein 150 1e-34 C3DAI4.1 C3DAI4_BACTU Putative uncharacterized protein 150 1e-34 >B3KEU7.1 B3KEU7_9BACI Regulatory protein ArsR Length = 323 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 150/306 (49%), Positives = 202/306 (66%), Gaps = 12/306 (3%) Query: 3 VEYEVEVQFEPVYELVSSIHTFICKKSNKKMDLGTSWSAEVAGKLSPELLSALEETELGN 62 + Y++E+ F PV EL++S+HT++CK +K++DLG W+ V LS E LE+T + Sbjct: 2 LSYQLELSFSPVNELINSLHTYLCKSWHKRIDLGPDWTQNVHASLSSEFADQLEQTGIDL 61 Query: 63 DWKLLNLLIYQCPVKDSVDTALEWLERLPVGEMYETLSEYISVFPVQMDQFRSRMHFLLS 122 +WKLL+LL Y P K+SV+ L WL++L +GE+Y LS Y+ FP R+R H +LS Sbjct: 62 EWKLLHLLAYVSPNKNSVEDFLSWLQKLTLGELYAVLSPYVQTFPEDFGAVRNRQHRMLS 121 Query: 123 EWNRQYFRGTSPEIIGKLRQHTEEQR----LEADNRAVSDFVNRTTNGFYFLPGDGLRKL 178 EWN YF+ P I+ LR EE+ EA +A + TNGF F P +GL KL Sbjct: 122 EWNEVYFKHIDPGIVTALRAEAEEKTGWGGFEAYEKAAA-----LTNGFCFEPVNGLEKL 176 Query: 179 VLIPQFHFQPANIIYSFGPLTICHYAARI-SVADEEISPS--MYRTLRSLGEKSRLKILQ 235 VLIP +HFQP NI YS+G LT+CHYA+RI ++EE PS +YR LRSL EKSRL+IL Sbjct: 177 VLIPHYHFQPGNIFYSYGSLTLCHYASRIWPHSEEEDEPSLQLYRLLRSLSEKSRLRILH 236 Query: 236 SLGGGRKTFTEIARQAGISKGIVHDHIFSLRCAGLLHAYIEGENVIAYSLRLEGIRRMNE 295 L +TF E+ R GISKGI HDHIF+LRCAGLL+ ++ GE V YSLR+E I+++ + Sbjct: 237 FLRSEPRTFIEVVRHLGISKGITHDHIFNLRCAGLLNVHVVGETVSTYSLRVERIQQIEQ 296 Query: 296 QLFEYL 301 LF+YL Sbjct: 297 GLFDYL 302 >Q9K7Z5.1 Q9K7Z5_BACHD BH3212 protein Length = 298 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 168/298 (56%), Gaps = 3/298 (1%) Query: 5 YEVEVQFEPVYELVSSIHTFICKKSNKKMDLGTSWSAEVAGKLSPELLSALEETELGNDW 64 Y++E+ + P YEL++S++T++ + + +LGT W +V ++ + + L++ +L Sbjct: 2 YKIEIDYSPAYELITSLYTYLDSSNRQISELGTKWVKQVEKSINADFANELKDQKLEVLH 61 Query: 65 KLLNLLIYQCPVKDSVDTALEWLERLPVGEMYETLSEYISVFPVQMDQFRSRMHFLLSEW 124 +L +LL++QCP K+++ L WLE+LP ++YE L ++ M Q ++ LL W Sbjct: 62 RL-SLLVWQCPHKETITGFLYWLEQLPSEKVYELLVPWVQQISKDMIQIQTYFVSLLRRW 120 Query: 125 NRQYFRGTSPEIIGKLRQHTEEQRLEADNRAVSDFVNRTTNGFYFLPGDGLRKLVLIPQF 184 N QYF S +I+ L++ ++ + A D V + TNG + + + + L+L+PQF Sbjct: 121 NEQYFCHLSEDILEMLQKDALKKTVLASQIDPVDLVEQCTNGMHIM-AENVDTLLLVPQF 179 Query: 185 HFQPANIIYSFGPLTICHYAARISVADEEISPSMYRTLRSLGEKSRLKILQSLGGGRKTF 244 H P ++I F L C Y + E + R ++SL ++ RLKIL+ L +TF Sbjct: 180 HQSPFSVIDYFDGLITCLYPVDQELKGEP-PKKLERQMKSLADERRLKILRYLQEKPRTF 238 Query: 245 TEIARQAGISKGIVHDHIFSLRCAGLLHAYIEGENVIAYSLRLEGIRRMNEQLFEYLQ 302 +EI + G++KG VH HI LR AG + A+ + V YSLR E + ++ + LF Y++ Sbjct: 239 SEIQQFTGLAKGNVHYHIKLLRTAGFIRAHHNSKRVEKYSLRDESLVQLQDVLFRYVK 296 >C0Z6G9.1 C0Z6G9_BREBN Probable transcriptional regulator Length = 306 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 152/295 (51%), Gaps = 11/295 (3%) Query: 5 YEVEVQFEPVYELVSSIHTFICKKSNKKMDLGTSWSAEVAGKLSPELLSALEETELGNDW 64 Y + V++ P YE + S++T+I +K K LGT+W E KL L + W Sbjct: 5 YSIRVEWSPAYECIISLYTYIYEKDRKHSLLGTAWLEETKQKLPASFADELAD----ERW 60 Query: 65 KLLN---LLIYQCPVKDSVDTALEWLERLPVGEMYETLSEYISVFPVQMDQFRSRMHFLL 121 ++L+ LL+ Q P SV+ L WLE +P GE+YE L+ ++ P+ + + R R LL Sbjct: 61 EVLHRLVLLVAQSPQTKSVEKFLGWLESIPPGEIYERLAPWVETIPLNLGEIRDRSLSLL 120 Query: 122 SEWNRQYFRGTSPEIIGKLRQHTEEQRLEADNRAVSDFVNRTTNGFYFLPGDGLRKLVLI 181 + WN YF P I+ L++ +E A D V+ TNG + P LR++VLI Sbjct: 121 TRWNEHYFSKMDPRILESLQRSADELTARAKETPPIDLVDHVTNGIWIEPMADLREVVLI 180 Query: 182 PQFHFQPANIIYSFGPLTICHYAARISVADEEISP--SMYRTLRSLGEKSRLKILQSLGG 239 PQ+H ++++ + L C Y + A + P + + L ++ RL+IL+ L Sbjct: 181 PQYHCAHSSVLDFYRGLATCMYPVK-DAATTKPQPLLELLPITQCLADEKRLQILRCLAK 239 Query: 240 GRKTFTEIARQAGISKGIVHDHIFSLRCAGLLHAYIEGENVIA-YSLRLEGIRRM 293 T E+ +Q ++K VH H+ +LR AGL+ A+ G I+ YSLR + R+ Sbjct: 240 KTCTLGELQKQVSLAKSTVHHHVTALRRAGLIRAHYTGSTTISYYSLREAFVERL 294 >C3FW28.1 C3FW28_BACTB Putative uncharacterized protein Length = 314 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 9/302 (2%) Query: 1 MAVEYEVEVQFEPVYELVSSIHTFICKKSNKKMDLGTSWSAEVAGKLSPELLSALEETEL 60 M EY + ++ P YEL+ S++ +I K++ L +W E +L ++ L++ Sbjct: 7 MDREYSIVIEHSPAYELIISLYNYINNDKMKEVHLKGNWLEETKLRLPERFINELQDER- 65 Query: 61 GNDWKLLN---LLIYQCPVKDSVDTALEWLERLPVGEMYETLSEYISVFPVQMDQFRSRM 117 W++L+ LLI QC K S+ L W E L GE+YE L+ ++ + R R Sbjct: 66 ---WEVLHRIVLLISQCEKKSSIPEFLNWFENLSAGEIYERLAPWVESISNDLSVIRDRS 122 Query: 118 HFLLSEWNRQYFRGTSPEIIGKLRQHTEEQRLEADNRAVSDFVNRTTNGFYFLPGDGLRK 177 +L +WN YF+ P I +L+Q + D + TNG D LRK Sbjct: 123 VDILYKWNEYYFKSIDPTIQMQLKQDAISLNEKLTVSRPIDIIETATNGLRIEQQDNLRK 182 Query: 178 LVLIPQFHFQPANIIYSFGPLTICHYAARISVADEEISPSMYRTLRSLGEKSRLKILQSL 237 ++L+PQ+H P+ ++ F + C Y + E+ + + + ++ LG+++RL IL L Sbjct: 183 VILVPQYHCSPSTVLDYFDGIATCLYPINKTFY-EDGTKELVKVMQCLGDETRLNILIFL 241 Query: 238 GGGRKTFTEIARQAGISKGIVHDHIFSLRCAGLLHAYIEGENVIA-YSLRLEGIRRMNEQ 296 G ++ EI + ++K VH HI L+ G++ ++ G ++ A YSLR E I ++N + Sbjct: 242 SRGPRSLIEIHKHMNLAKSTVHHHITKLKREGIIRSHFIGSSIPAFYSLRKEAISKINNK 301 Query: 297 LF 298 Sbjct: 302 FM 303 >C3DAI4.1 C3DAI4_BACTU Putative uncharacterized protein Length = 314 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 9/302 (2%) Query: 1 MAVEYEVEVQFEPVYELVSSIHTFICKKSNKKMDLGTSWSAEVAGKLSPELLSALEETEL 60 M EY + ++ P YEL+ S++ +I K++ L +W E +L ++ L++ Sbjct: 7 MDREYSIVIEHSPAYELIISLYNYINNDKMKEVHLKGNWLEETKLRLPERFINELQDER- 65 Query: 61 GNDWKLLN---LLIYQCPVKDSVDTALEWLERLPVGEMYETLSEYISVFPVQMDQFRSRM 117 W++L+ LLI QC K S+ L W E L GE+YE L+ ++ + R R Sbjct: 66 ---WEVLHRIVLLISQCEKKSSIPEFLNWFENLSAGEIYERLAPWVESISNDLSVIRDRS 122 Query: 118 HFLLSEWNRQYFRGTSPEIIGKLRQHTEEQRLEADNRAVSDFVNRTTNGFYFLPGDGLRK 177 +L +WN YF+ P I +L+Q + D + TNG D LRK Sbjct: 123 VDILYKWNEYYFKSIDPTIQMQLKQDAISLNEKLTVSRPIDIIETATNGLRIEQQDNLRK 182 Query: 178 LVLIPQFHFQPANIIYSFGPLTICHYAARISVADEEISPSMYRTLRSLGEKSRLKILQSL 237 ++L+PQ+H P+ ++ F + C Y + E+ + + + ++ LG+++RL IL L Sbjct: 183 VILVPQYHCSPSTVLDYFDGIATCLYPINKTFY-EDGTKELVKVMQCLGDETRLNILIFL 241 Query: 238 GGGRKTFTEIARQAGISKGIVHDHIFSLRCAGLLHAYIEGENVIA-YSLRLEGIRRMNEQ 296 G ++ EI + ++K VH HI L+ G++ ++ G ++ A YSLR E I ++N + Sbjct: 242 SRGPRSLIEIHKHMNLAKSTVHHHITKLKREGIIRSHFIGSSIPAFYSLRKEAISKINNK 301 Query: 297 LF 298 Sbjct: 302 FM 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,778,903,125 Number of extensions: 73701098 Number of successful extensions: 168632 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 168551 Number of HSP's successfully gapped: 87 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)