BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0003.p
         (96 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4L6B0.1 C4L6B0_EXISA Putative uncharacterized protein                 85   2e-15
Q99RB4.1 Q99RB4_STAAM Putative uncharacterized protein                 83   9e-15
Q7A3I0.1 Q7A3I0_STAAN Putative uncharacterized protein SA2309          83   9e-15
A7X6L4.1 A7X6L4_STAA1 Putative uncharacterized protein                 83   9e-15
A6U4Q1.1 A6U4Q1_STAA2 Putative uncharacterized protein                 83   9e-15

>C4L6B0.1 C4L6B0_EXISA Putative uncharacterized protein
          Length = 90

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 7  IEQGEGRFYIAGDGKDLAEITYRTDETTGNWVIDHTFVSEDLRGQGAGEKLVRAVVDKAR 66
          I+Q E  FY+  + K  AE+ Y         ++DHT+VS++LRGQG GEKLV AVV+ AR
Sbjct: 3  IKQKENTFYVGDEAKPSAELHY-VPTGPDKLIVDHTYVSDELRGQGIGEKLVVAVVEYAR 61

Query: 67 AEQVKIVPQCPYAAHQFKKHEEYGDVLS 94
           +   I+P CP+  +QF +H EY DVL+
Sbjct: 62 EQGKTIIPLCPFTKNQFDRHPEYHDVLA 89


>Q99RB4.1 Q99RB4_STAAM Putative uncharacterized protein
          Length = 94

 Score = 82.8 bits (203), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 1  VKNMESIEQGEGRFYIAGDGKD-LAEITYR-TDETTGNWVIDHTFVSEDLRGQGAGEKLV 58
          + N+E I+QGE +FYI  D  + LAEITYR  D    N  IDHT VS++L GQG G+KLV
Sbjct: 1  MSNLE-IKQGENKFYIGDDENNALAEITYRFVDNNEIN--IDHTGVSDELGGQGVGKKLV 57

Query: 59 RAVVDKARAEQVKIVPQCPYAAHQFKKHEEYGDV 92
          +AVV+ AR   +KI+  C +A H  +K + Y DV
Sbjct: 58 KAVVEHARENHLKIIASCSFAKHMLEKEDSYQDV 91


>Q7A3I0.1 Q7A3I0_STAAN Putative uncharacterized protein SA2309
          Length = 94

 Score = 82.8 bits (203), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 1  VKNMESIEQGEGRFYIAGDGKD-LAEITYR-TDETTGNWVIDHTFVSEDLRGQGAGEKLV 58
          + N+E I+QGE +FYI  D  + LAEITYR  D    N  IDHT VS++L GQG G+KLV
Sbjct: 1  MSNLE-IKQGENKFYIGDDENNALAEITYRFVDNNEIN--IDHTGVSDELGGQGVGKKLV 57

Query: 59 RAVVDKARAEQVKIVPQCPYAAHQFKKHEEYGDV 92
          +AVV+ AR   +KI+  C +A H  +K + Y DV
Sbjct: 58 KAVVEHARENHLKIIASCSFAKHMLEKEDSYQDV 91


>A7X6L4.1 A7X6L4_STAA1 Putative uncharacterized protein
          Length = 94

 Score = 82.8 bits (203), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 1  VKNMESIEQGEGRFYIAGDGKD-LAEITYR-TDETTGNWVIDHTFVSEDLRGQGAGEKLV 58
          + N+E I+QGE +FYI  D  + LAEITYR  D    N  IDHT VS++L GQG G+KLV
Sbjct: 1  MSNLE-IKQGENKFYIGDDENNALAEITYRFVDNNEIN--IDHTGVSDELGGQGVGKKLV 57

Query: 59 RAVVDKARAEQVKIVPQCPYAAHQFKKHEEYGDV 92
          +AVV+ AR   +KI+  C +A H  +K + Y DV
Sbjct: 58 KAVVEHARENHLKIIASCSFAKHMLEKEDSYQDV 91


>A6U4Q1.1 A6U4Q1_STAA2 Putative uncharacterized protein
          Length = 94

 Score = 82.8 bits (203), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 1  VKNMESIEQGEGRFYIAGDGKD-LAEITYR-TDETTGNWVIDHTFVSEDLRGQGAGEKLV 58
          + N+E I+QGE +FYI  D  + LAEITYR  D    N  IDHT VS++L GQG G+KLV
Sbjct: 1  MSNLE-IKQGENKFYIGDDENNALAEITYRFVDNNEIN--IDHTGVSDELGGQGVGKKLV 57

Query: 59 RAVVDKARAEQVKIVPQCPYAAHQFKKHEEYGDV 92
          +AVV+ AR   +KI+  C +A H  +K + Y DV
Sbjct: 58 KAVVEHARENHLKIIASCSFAKHMLEKEDSYQDV 91


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 587,857,541
Number of extensions: 21991063
Number of successful extensions: 44520
Number of sequences better than 1.0e-05: 233
Number of HSP's gapped: 44504
Number of HSP's successfully gapped: 233
Length of query: 96
Length of database: 3,060,696,203
Length adjustment: 65
Effective length of query: 31
Effective length of database: 2,448,330,228
Effective search space: 75898237068
Effective search space used: 75898237068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)