BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0002.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B9K5.1 Q2B9K5_9BACI Putative uncharacterized protein 187 6e-46 A6CHH6.1 A6CHH6_9BACI Putative uncharacterized protein 184 1e-44 B3KD26.1 B3KD26_9BACI GCN5-related N-acetyltransferase 159 2e-37 Q5WB29.1 Q5WB29_BACSK Putative uncharacterized protein 152 3e-35 C0ZG64.1 C0ZG64_BREBN Putative uncharacterized protein 149 3e-34 >Q2B9K5.1 Q2B9K5_9BACI Putative uncharacterized protein Length = 274 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 151/278 (54%), Gaps = 10/278 (3%) Query: 5 TAEMLKDIEELQQRCEQYEGISLKLNWDMLRLSPEAGGAEWLVTYEEDVLAGFIGLYGIA 64 T LK+I+ELQ CE +E LKLNWDML+ ++ TY++ L GF+ LY Sbjct: 3 TVRQLKEIKELQDICENHEDFRLKLNWDMLKSRNNETKTDFF-TYQDGRLTGFLALYPFG 61 Query: 65 GEMEVCGMVRPGFRRRGIFTSLWEQAQSIIKRNQIRTLLLNXXXXXXXXXGFLKTLPVVF 124 ++EVCGMV P +R++G+FT+L +QA+ + +LLN ++LP + Sbjct: 62 AKVEVCGMVHPEYRKKGLFTALLKQAEKQLA--SASEVLLNAPAESYAAKQLFQSLPCRY 119 Query: 125 NHAEYQMKWDGSAVPQGSPEASSAAGAVVLRPARQDEADLLVELDCSGFDMSKEDAAEMY 184 + E+QMK+ S + S V +R A +A L ++LD F +S+EDA Y Sbjct: 120 SFTEHQMKYFHS-------DTLSEKEGVEIRSASAGDAGLCIQLDIVCFSLSEEDATLFY 172 Query: 185 TXXXXXXXXXXXXXXXXGQPAGKMRLWTEDNETWIYGFTVDKKLRGLGIGRSALLQTIER 244 G PAGK+R+ T+ NE+WIYGF + + + GIGRS L + I + Sbjct: 173 GQTAAEQAQTLFIIEYRGVPAGKVRIQTDGNESWIYGFAILPEFQRRGIGRSVLSRIIRQ 232 Query: 245 EQRNYNGVNLEVALDNPNALRLYESCGFVILNKQDYYR 282 E+ + LEVA +N NAL LY SCGFV L QDYY+ Sbjct: 233 ERNRGRDIFLEVAAENNNALNLYTSCGFVPLESQDYYQ 270 >A6CHH6.1 A6CHH6_9BACI Putative uncharacterized protein Length = 275 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 9/277 (3%) Query: 7 EMLKDIEELQQRCEQYEGISLKLNWDMLRLSPEAGGAEWLVTYEEDVLAGFIGLYGIAGE 66 + LKDIE LQ+ CE EG LKLN DML LS ++ YE L GF+GLYG Sbjct: 5 QQLKDIEGLQEICENQEGYKLKLNGDML-LSRNHRQDDYF-HYENGKLIGFLGLYGFGSS 62 Query: 67 MEVCGMVRPGFRRRGIFTSLWEQAQSIIKRNQIRTLLLNXXXXXXXXXGFLKTLPVVFNH 126 E+CGMV P R +GIF SL++Q+ + +K +++ LL+N F++TLP ++ Sbjct: 63 YELCGMVHPAHREKGIFRSLFQQSAASLKERRVKKLLINAPGSSQSGKAFIETLPAKYSF 122 Query: 127 AEYQMKWDGSAVPQGSPEASSAAGAVVLRPARQDEADLLVELDCSGFDMSKEDAAEMYTX 186 +EYQMKW+ + + + E + L P Q++ +++LD FD+ ++D+ + Sbjct: 123 SEYQMKWEPKQLKEENNE-------IQLIPVNQEDIPFILDLDYLCFDVERDDSLQFMET 175 Query: 187 XXXXXXXXXXXXXXXGQPAGKMRLWTEDNETWIYGFTVDKKLRGLGIGRSALLQTIEREQ 246 + GK+ + E+N ++IYGF V +G GIGRS L +T+ E Sbjct: 176 VQKDETSSSFMIEYKEEKVGKIHIQREENRSYIYGFAVHPSHQGKGIGRSVLAKTVLTEN 235 Query: 247 RNYNGVNLEVALDNPNALRLYESCGFVILNKQDYYRY 283 + + LEVA N +AL+LYE GFV QDYY Y Sbjct: 236 KAGRDIFLEVAAKNAHALKLYEGTGFVSYQVQDYYAY 272 >B3KD26.1 B3KD26_9BACI GCN5-related N-acetyltransferase Length = 273 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 11/279 (3%) Query: 5 TAEMLKDIEELQQRCEQYEGISLKLNWDMLRLSPEAGGAEWLVTYEEDVLAGFIGLYGIA 64 T + LKDIE+LQ CE ++ + LKLNW+MLR YEE+ L F+GLY Sbjct: 3 TTQQLKDIEQLQSECELHDHVQLKLNWEMLRERNTENLD--FFHYEENELVAFLGLYPFG 60 Query: 65 GEMEVCGMVRPGFRRRGIFTSLWEQAQSIIKRNQIRTLLLNXXXXXXXXXGFLKTLPVVF 124 +E+CGMV+P RR+G F L+ +K + +LLN FL L Sbjct: 61 STVEICGMVKPAERRKGHFQRLFHLGMEQVKLAGYKKILLNAPAGSDAAKAFLHQLGAEH 120 Query: 125 NHAEYQMKWDGSAVPQGSPEASSAAGAVVLRPARQDEADLLVELDCSGFDMSKEDAAEMY 184 +E+QM W Q P S ++LR A ++ + V L F + +EDA M Sbjct: 121 AFSEHQMTW------QEMPLEDS--DGILLRQATLEDYETSVRLSVEAFGLDEEDARAME 172 Query: 185 TXXXXXXXXXXXXXXXXGQPAGKMRLWTEDNETWIYGFTVDKKLRGLGIGRSALLQTIER 244 + + GK+R+ E+ + WIYGF++ + +G GIGR AL + ++ Sbjct: 173 SHHFADNTGMFMIDVNE-ETVGKLRVSREEGQAWIYGFSILPEYQGRGIGRKALRRIVKE 231 Query: 245 EQRNYNGVNLEVALDNPNALRLYESCGFVILNKQDYYRY 283 + V+LEV N +ALRLYES GF ++ QDYY+Y Sbjct: 232 QSSAGYSVHLEVETKNDHALRLYESVGFQAVHAQDYYQY 270 >Q5WB29.1 Q5WB29_BACSK Putative uncharacterized protein Length = 274 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 12/282 (4%) Query: 1 MRLNTAEMLKDIEELQQRCEQYEGISLKLNWDMLRLSPEAGGAEWLVTY-EEDVLAGFIG 59 M + ++E K I+ LQ++ EQ +GI LKLNWD+L G E Y E+ L G++ Sbjct: 1 MIMLSSEQKKAIQSLQEKVEQADGIKLKLNWDLLEGERSLNGTEDYFYYNEKGELLGYLA 60 Query: 60 LYGIAGEMEVCGMVRPGFRRRGIFTSLWEQAQSIIKRNQIRTLLLNXXXXXXXXXGFLKT 119 +Y +ME CGMV P RRRGI L +QA S + + + LLN F+K Sbjct: 61 VYFFGNKMECCGMVDPAARRRGIGRMLLDQAASDWQ-GKTKQFLLNSPTDSESGIAFMKA 119 Query: 120 LPVVFNHAEYQMKWDGSAVPQGSPEASSAAGAVVLRPARQDEADLLVELDCSGFDMSKED 179 + + E Q+ +P + +RPA ++ + + ELD GF M+K++ Sbjct: 120 VGAEYAFTEKQLVCREVPIPY-------TKKGIRIRPAVSNDEERIYELDAEGFHMTKDE 172 Query: 180 AAEMYTXXXXXXXXXXXXXXXXGQPAGKMRLWTEDNETWIYGFTVDKKLRGLGIGRSALL 239 A ++ P GK+ + +D E+WIY F + K+ RG GIGR+AL Sbjct: 173 AKALH---HNNPTWVTYMIEEDNHPVGKLSISRQDQESWIYAFVLTKEKRGQGIGRAALT 229 Query: 240 QTIEREQRNYNGVNLEVALDNPNALRLYESCGFVILNKQDYY 281 + RE N V L+V N AL LY +CGF + Q YY Sbjct: 230 DIVHREVSNGKTVWLDVVCTNEAALTLYHTCGFTEVGSQTYY 271 >C0ZG64.1 C0ZG64_BREBN Putative uncharacterized protein Length = 296 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 149/283 (52%), Gaps = 11/283 (3%) Query: 5 TAEMLKDIEELQQRCEQYE--GISLKLNWDMLRLSPEAGGAEWLVTYEEDVLAGFIGLYG 62 + E LK I L + CE Y+ +S+ LN ML+ ++L ++ L GF+G+Y Sbjct: 17 SEEWLKQIVHLAKICEAYDEFDLSVNLNVSMLQNRQPEQTNDFLYV-QDGQLVGFLGMYA 75 Query: 63 IAG--EMEVCGMVRPGFRRRGIFTSLWEQAQSIIKRNQIRTLLLNXXXXXXXXXGFLKTL 120 I E+E+ GMV P +RR+GIF +L+EQA++ ++ ++ +LL F + + Sbjct: 76 IVSPKEVEISGMVHPDYRRKGIFRALYEQAKAECEKREVTQILLVSNRKSKEASSFAEGV 135 Query: 121 PVVFNHAEYQMKWDGSAVPQGSPEASSAAGAVVLRPARQDEADLLVELDCSGFDMSKEDA 180 + +EY++ + +A A + + L PA ++ LVE+ SGF+ + E Sbjct: 136 ATTYQFSEYKLDYSATA----HVTAVESDNRLQLFPATTNDFQTLVEIGVSGFEDTAELM 191 Query: 181 AEMYTXXXXXXXXXXXXXXXXGQPAGKMRLWTEDNETWIYGFTVDKKLRGLGIGRSALLQ 240 + T +P G + + EDNE +I GF V K L+G G+GR L Q Sbjct: 192 TALVTRNLSEPSFQTYLAQYESEPVGMITVSEEDNEFFISGFCVKKGLQGKGLGRKILSQ 251 Query: 241 TIE--REQRNYNGVNLEVALDNPNALRLYESCGFVILNKQDYY 281 T+E ++ + G++LEVA+DN NAL LY+S GF +++ DYY Sbjct: 252 TVEILNQREHIGGISLEVAVDNQNALSLYQSTGFEVVSVYDYY 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,578,346,500 Number of extensions: 58373902 Number of successful extensions: 145133 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 145245 Number of HSP's successfully gapped: 87 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)