BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0001.p
         (356 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DCB3.1 B1DCB3_9BACL NAD-dependent epimerase/dehydratase             605   e-171
B3KC65.1 B3KC65_9BACI NAD-dependent epimerase/dehydratase             600   e-170
C0ZVB1.1 C0ZVB1_RHOE4 Putative uncharacterized protein                556   e-156
C1B1Y2.1 C1B1Y2_RHOOB Putative oxidoreductase                         534   e-150
Q0SDZ7.1 Q0SDZ7_RHOSR Putative uncharacterized protein                531   e-149

>B1DCB3.1 B1DCB3_9BACL NAD-dependent epimerase/dehydratase
          Length = 354

 Score =  605 bits (1559), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/356 (81%), Positives = 313/356 (87%), Gaps = 2/356 (0%)

Query: 1   MNPNDAVQRKTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLD 60
           M   DA   KTALV+GANGVIGRNLI +L TL EWDIIGVSRRGG ++ RVRYIAADLLD
Sbjct: 1   MKTTDA--SKTALVVGANGVIGRNLIDYLRTLSEWDIIGVSRRGGEDSQRVRYIAADLLD 58

Query: 61  AEETRLKLGTLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQ 120
            E+T  KL  L  VTHIFYAAYQ+RPTWAELV PNLAMLVN V A+EP+ARNLQHISLMQ
Sbjct: 59  EEDTGEKLSGLTAVTHIFYAAYQDRPTWAELVAPNLAMLVNVVNAIEPIARNLQHISLMQ 118

Query: 121 GYKVYGAHLGPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFAL 180
           GYKVYGAHLGPFKTPARETDA HMPPEFN+DQQ FLE+RQ   +WTWSA+RPSVV GF L
Sbjct: 119 GYKVYGAHLGPFKTPARETDAYHMPPEFNVDQQQFLERRQPESSWTWSALRPSVVAGFGL 178

Query: 181 GNPMNLAMVIAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCAN 240
           GNPMNLAMVIAVYAS+SKELGLPLRFPGKPGAYHSLLEMTDA LLA+ATVWAATD RCAN
Sbjct: 179 GNPMNLAMVIAVYASMSKELGLPLRFPGKPGAYHSLLEMTDANLLARATVWAATDERCAN 238

Query: 241 QAFNITNGDLFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNS 300
           QAFNITNGDLFRW+ELWPK+AA+FGLETAPPLPMSL VVM DKE LWN M++KY L+   
Sbjct: 239 QAFNITNGDLFRWNELWPKIAAYFGLETAPPLPMSLEVVMADKEPLWNAMIDKYDLQKLG 298

Query: 301 YRDVSSWGFGDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356
           Y+DVSSW FGDFVFSWDYDFFADGSKARRFGFH++IDTE MFM+IF D R RKVIP
Sbjct: 299 YKDVSSWRFGDFVFSWDYDFFADGSKARRFGFHDYIDTEKMFMDIFEDFRQRKVIP 354


>B3KC65.1 B3KC65_9BACI NAD-dependent epimerase/dehydratase
          Length = 358

 Score =  600 bits (1547), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/348 (81%), Positives = 313/348 (89%)

Query: 9   RKTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKL 68
           +KTALV+GANGVIG NLI +LATL  WDIIGVSRRGG +T+RVRYI+ADLLD E+T  KL
Sbjct: 11  QKTALVVGANGVIGCNLIKYLATLQGWDIIGVSRRGGESTNRVRYISADLLDREDTIAKL 70

Query: 69  GTLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGAH 128
            +L EVTHIFYAAYQ+RPTWAELV PNLAMLV+ VEA+EP+A NLQH+SLMQGYKVYGAH
Sbjct: 71  SSLTEVTHIFYAAYQDRPTWAELVAPNLAMLVHVVEAIEPIADNLQHVSLMQGYKVYGAH 130

Query: 129 LGPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLAM 188
           LGPFKTPARETDANHMPPEFN+DQQNFLE+RQ GK WTWSA+RPSVV GFALGNPMNLAM
Sbjct: 131 LGPFKTPARETDANHMPPEFNVDQQNFLEERQQGKAWTWSALRPSVVSGFALGNPMNLAM 190

Query: 189 VIAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITNG 248
           VIAVYASISKELG+PLRFPGKPGAY SLLEMTDA LLA+ATVWAATD RCANQAFNITNG
Sbjct: 191 VIAVYASISKELGIPLRFPGKPGAYQSLLEMTDADLLAKATVWAATDERCANQAFNITNG 250

Query: 249 DLFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSWG 308
           DLFRW+ELWPK+A +F +ETAPPL M+L  VM DKE +WN MVEK+ L  + Y +VSSW 
Sbjct: 251 DLFRWNELWPKIALYFEMETAPPLQMNLETVMADKEPVWNRMVEKHGLAKHDYDEVSSWK 310

Query: 309 FGDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356
           FGDFVFSWDYDFFADGSKARRFGFHE++DTEAMFMNIF +LR RKVIP
Sbjct: 311 FGDFVFSWDYDFFADGSKARRFGFHEYVDTEAMFMNIFDELRRRKVIP 358


>C0ZVB1.1 C0ZVB1_RHOE4 Putative uncharacterized protein
          Length = 352

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/349 (73%), Positives = 298/349 (85%)

Query: 8   QRKTALVIGANGVIGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLK 67
             K ALV+GA GVIG NLI HL +  EW IIG+SRRGG NT RV +IA DLLD   T   
Sbjct: 4   HNKVALVVGARGVIGGNLIDHLESTGEWKIIGLSRRGGTNTDRVEHIAVDLLDPSRTAAA 63

Query: 68  LGTLPEVTHIFYAAYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGA 127
           L  L +VTH+FYAAYQ+RPTWAELVPPNLAMLVN ++A+EPVA  L+H+SLMQGYKVYGA
Sbjct: 64  LSGLDDVTHVFYAAYQDRPTWAELVPPNLAMLVNTLDAIEPVAGGLEHVSLMQGYKVYGA 123

Query: 128 HLGPFKTPARETDANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLA 187
           HLGPFKTPARE+D  HMPPEFN+DQQ FLE+RQ+GK+WTWSA+RPSVV GFALGNPMNLA
Sbjct: 124 HLGPFKTPARESDPPHMPPEFNVDQQQFLERRQLGKSWTWSAIRPSVVSGFALGNPMNLA 183

Query: 188 MVIAVYASISKELGLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITN 247
           MVIAVYA+ISK+LG+PLRFPGKPGAY SL+EMTDAGLLA+ATVWAAT+  CANQAFNI N
Sbjct: 184 MVIAVYATISKKLGVPLRFPGKPGAYTSLIEMTDAGLLAEATVWAATNPECANQAFNINN 243

Query: 248 GDLFRWDELWPKLAAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSW 307
           GDLFRW E+WPK+AAFF ++ APPLPMSL V M DKE++W+ +VE++ L    Y DVSSW
Sbjct: 244 GDLFRWQEMWPKIAAFFDMDVAPPLPMSLDVAMADKESVWDELVEEHQLARTPYSDVSSW 303

Query: 308 GFGDFVFSWDYDFFADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356
           GFGDFVF WDYDFFADGSKARRFGFH  +DTEAMF++IF +L++RK+IP
Sbjct: 304 GFGDFVFGWDYDFFADGSKARRFGFHRHVDTEAMFLDIFANLQARKIIP 352


>C1B1Y2.1 C1B1Y2_RHOOB Putative oxidoreductase
          Length = 352

 Score =  534 bits (1375), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/336 (74%), Positives = 282/336 (83%)

Query: 21  IGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKLGTLPEVTHIFYA 80
           IG NLI HL    EWD+IG+SRRGG +T RVR+IA DLLD  +   KLG L EVTHIFYA
Sbjct: 17  IGGNLIDHLEATGEWDVIGLSRRGGTDTDRVRHIAVDLLDERDAAGKLGELREVTHIFYA 76

Query: 81  AYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGAHLGPFKTPARETD 140
           AYQ+RP+WAELV PN+AMLVN V A+EPVA  L+HISLMQGYKVYGAHLGPFKTPARETD
Sbjct: 77  AYQDRPSWAELVAPNVAMLVNTVNALEPVAAGLEHISLMQGYKVYGAHLGPFKTPARETD 136

Query: 141 ANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLAMVIAVYASISKEL 200
             HMPPEFN+DQQ FLE RQ GK WTWSA+RPSVVCGFALGNPMNLA+VIAVYA++SKEL
Sbjct: 137 PPHMPPEFNVDQQQFLEDRQRGKRWTWSAIRPSVVCGFALGNPMNLALVIAVYATMSKEL 196

Query: 201 GLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITNGDLFRWDELWPKL 260
           G+PLRFPGKPGAY SLLEMTDAGLLA+ATVWAAT   CAN+AFNI NGDLFRWDE+ PK+
Sbjct: 197 GVPLRFPGKPGAYTSLLEMTDAGLLAEATVWAATTPECANRAFNINNGDLFRWDEMLPKI 256

Query: 261 AAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSWGFGDFVFSWDYDF 320
           A FF L+ APPLPMS+ VVM DKE +WN +V K+ L P  Y DVSSW FGDFVF WDYD 
Sbjct: 257 AEFFELDVAPPLPMSMDVVMADKEPVWNDLVAKHGLAPTPYSDVSSWAFGDFVFGWDYDV 316

Query: 321 FADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356
            ADGSKARRFGFH  ++TE MF++IF DLR+RK+IP
Sbjct: 317 IADGSKARRFGFHRHVETERMFLDIFRDLRARKIIP 352


>Q0SDZ7.1 Q0SDZ7_RHOSR Putative uncharacterized protein
          Length = 352

 Score =  531 bits (1367), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 249/336 (74%), Positives = 281/336 (83%)

Query: 21  IGRNLIGHLATLPEWDIIGVSRRGGVNTSRVRYIAADLLDAEETRLKLGTLPEVTHIFYA 80
           IG NLI HL    EW+IIG+SRRGG +T RVR+IA DLLD  +   KLG L +VTHIFYA
Sbjct: 17  IGGNLIDHLEATGEWEIIGLSRRGGSDTDRVRHIAVDLLDQRDAAEKLGELRDVTHIFYA 76

Query: 81  AYQERPTWAELVPPNLAMLVNAVEAVEPVARNLQHISLMQGYKVYGAHLGPFKTPARETD 140
           AYQ+RP+WAELV PN AMLVN V A+EPVA  L+HISLMQGYKVYGAHLGPFKTPARE+D
Sbjct: 77  AYQDRPSWAELVAPNFAMLVNTVNALEPVAAGLEHISLMQGYKVYGAHLGPFKTPARESD 136

Query: 141 ANHMPPEFNIDQQNFLEQRQIGKTWTWSAMRPSVVCGFALGNPMNLAMVIAVYASISKEL 200
             HMPPEFN+DQQ FLE RQ GK WTWSA+RPSVVCGFALGNPMNLA+VIAVYA++SKEL
Sbjct: 137 PPHMPPEFNVDQQQFLEGRQRGKRWTWSAIRPSVVCGFALGNPMNLALVIAVYATMSKEL 196

Query: 201 GLPLRFPGKPGAYHSLLEMTDAGLLAQATVWAATDSRCANQAFNITNGDLFRWDELWPKL 260
           G+PLRFPGKPGAY SL+EMTDAGLLA+ATVWAAT   CANQAFNI NGDLFRWDE+ PK+
Sbjct: 197 GVPLRFPGKPGAYTSLIEMTDAGLLAEATVWAATTPECANQAFNINNGDLFRWDEMLPKI 256

Query: 261 AAFFGLETAPPLPMSLSVVMEDKEALWNGMVEKYSLEPNSYRDVSSWGFGDFVFSWDYDF 320
           A FF L+ APPLPMS+ VVM DKE +WN +V K+ LEP  Y DVSSW FGDFVF WDYD 
Sbjct: 257 ADFFDLDVAPPLPMSMDVVMADKEPVWNDLVAKHGLEPTPYSDVSSWAFGDFVFGWDYDV 316

Query: 321 FADGSKARRFGFHEFIDTEAMFMNIFTDLRSRKVIP 356
            ADGSKARR GFH  ++TE MF++IF DLR+RK+IP
Sbjct: 317 IADGSKARRLGFHRHVETEQMFLDIFRDLRARKIIP 352


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,201,787,396
Number of extensions: 91485553
Number of successful extensions: 191817
Number of sequences better than 1.0e-05: 240
Number of HSP's gapped: 191177
Number of HSP's successfully gapped: 241
Length of query: 356
Length of database: 3,060,696,203
Length adjustment: 137
Effective length of query: 219
Effective length of database: 1,770,017,148
Effective search space: 387633755412
Effective search space used: 387633755412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)