BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0008.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0A657.1 B0A657_9CLOT Putative uncharacterized protein 251 3e-65 C3BMX4.1 C3BMX4_9BACI GPR1/FUN34/YaaH 244 3e-63 C3B5W5.1 C3B5W5_BACMY GPR1/FUN34/YaaH 244 3e-63 C3ANG6.1 C3ANG6_BACMY GPR1/FUN34/YaaH 244 3e-63 B9DZW3.1 B9DZW3_CLOK1 Putative uncharacterized protein 241 3e-62 >B0A657.1 B0A657_9CLOT Putative uncharacterized protein Length = 203 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 126/201 (62%), Positives = 148/201 (73%) Query: 13 NTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQLFASIQD 72 N VK+VTADPSA+GLFGLAI+TLVASSQKL +T+G+S +PWAIFLGA AQL ASI D Sbjct: 3 NETKVKVVTADPSALGLFGLAIITLVASSQKLGLTSGVSLVLPWAIFLGATAQLMASIND 62 Query: 73 AKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYLVFTLFM 132 KHNNTFG TAFGAYAFFW+ + +WLI+ GVFG LA D KQLGF +LGYL+FT+FM Sbjct: 63 FKHNNTFGATAFGAYAFFWYAVGFTWLIQNGVFGAELAAACDSKQLGFAYLGYLIFTIFM 122 Query: 133 TLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLYGCGASV 192 T+GA+E ++ T+ SFG+ H LAA SELAI IVS YGCGA+V Sbjct: 123 TIGAMETHKVLFTIFVLIDFLFLGLTLTSFGIMEHATHMLAAYSELAIAIVSFYGCGAAV 182 Query: 193 LNAHFGRQFLPVGDPLGIFKK 213 LN HFG+ FLPVG P GIFKK Sbjct: 183 LNTHFGKVFLPVGKPFGIFKK 203 >C3BMX4.1 C3BMX4_9BACI GPR1/FUN34/YaaH Length = 205 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 146/207 (70%), Gaps = 2/207 (0%) Query: 7 MSAQSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQL 66 MS Q+ T VK+ TADPS IGLFGLA+VTLVASSQKL +T G+S+ +PWAIFLG FAQL Sbjct: 1 MSNQT--THHVKMTTADPSGIGLFGLAMVTLVASSQKLGLTDGVSFVLPWAIFLGGFAQL 58 Query: 67 FASIQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYL 126 FA I DAKHNNTFG TAFGAY FW G+ SWLI+LGVFG LA+ VDPKQLG F+GYL Sbjct: 59 FACIHDAKHNNTFGTTAFGAYGLFWLGVGTSWLIQLGVFGEKLAQAVDPKQLGVAFIGYL 118 Query: 127 VFTLFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLY 186 +FT+FMT+GA+E ++ + + GV H LAA SEL I ++S Y Sbjct: 119 IFTIFMTIGAMETHKVLFMIFVLIDFLFIGLSFSTLGVMPHAMHNLAAYSELCISLLSFY 178 Query: 187 GCGASVLNAHFGRQFLPVGDPLGIFKK 213 G A+VLN HFG+ LPVG P GIFKK Sbjct: 179 GSAAAVLNTHFGKVVLPVGKPFGIFKK 205 >C3B5W5.1 C3B5W5_BACMY GPR1/FUN34/YaaH Length = 205 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 146/207 (70%), Gaps = 2/207 (0%) Query: 7 MSAQSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQL 66 MS Q+ T VK+ TADPS IGLFGLA+VTLVASSQKL +T G+S+ +PWAIFLG FAQL Sbjct: 1 MSNQT--THHVKMTTADPSGIGLFGLAMVTLVASSQKLGLTDGVSFVLPWAIFLGGFAQL 58 Query: 67 FASIQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYL 126 FA I DAKHNNTFG TAFGAY FW G+ SWLI+LGVFG LA+ VDPKQLG F+GYL Sbjct: 59 FACIHDAKHNNTFGTTAFGAYGLFWLGVGTSWLIQLGVFGEKLAQAVDPKQLGVAFIGYL 118 Query: 127 VFTLFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLY 186 +FT+FMT+GA+E ++ + + GV H LAA SEL I ++S Y Sbjct: 119 IFTIFMTIGAMETHKVLFMIFVLIDFLFIGLSFSTLGVMPHAMHNLAAYSELCISLLSFY 178 Query: 187 GCGASVLNAHFGRQFLPVGDPLGIFKK 213 G A+VLN HFG+ LPVG P GIFKK Sbjct: 179 GSAAAVLNTHFGKVVLPVGKPFGIFKK 205 >C3ANG6.1 C3ANG6_BACMY GPR1/FUN34/YaaH Length = 205 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 146/207 (70%), Gaps = 2/207 (0%) Query: 7 MSAQSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQL 66 MS Q+ T VK+ TADPS IGLFGLA+VTLVASSQKL +T G+S+ +PWAIFLG FAQL Sbjct: 1 MSNQT--THHVKMTTADPSGIGLFGLAMVTLVASSQKLGLTDGVSFVLPWAIFLGGFAQL 58 Query: 67 FASIQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYL 126 FA I DAKHNNTFG TAFGAY FW G+ SWLI+LGVFG LA+ VDPKQLG F+GYL Sbjct: 59 FACIHDAKHNNTFGTTAFGAYGLFWLGVGTSWLIQLGVFGEKLAQAVDPKQLGVAFIGYL 118 Query: 127 VFTLFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLY 186 +FT+FMT+GA+E ++ + + GV H LAA SEL I ++S Y Sbjct: 119 IFTIFMTIGAMETHKVLFMIFVLIDFLFIGLSFSTLGVMPHAMHNLAAYSELCISLLSFY 178 Query: 187 GCGASVLNAHFGRQFLPVGDPLGIFKK 213 G A+VLN HFG+ LPVG P GIFKK Sbjct: 179 GSAAAVLNTHFGKVVLPVGKPFGIFKK 205 >B9DZW3.1 B9DZW3_CLOK1 Putative uncharacterized protein Length = 205 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/204 (57%), Positives = 140/204 (68%) Query: 10 QSPNTQSVKIVTADPSAIGLFGLAIVTLVASSQKLEITTGLSYCIPWAIFLGAFAQLFAS 69 S Q +KI DPSA+GLFGLA+VTLVASSQKL IT G S+ IPWAIFLG FAQLFA Sbjct: 2 NSNEIQHIKIANCDPSALGLFGLAVVTLVASSQKLGITEGTSFVIPWAIFLGGFAQLFAC 61 Query: 70 IQDAKHNNTFGMTAFGAYAFFWFGMAASWLIKLGVFGTALAEGVDPKQLGFVFLGYLVFT 129 I D+K NTFG TAFGA+A FWF + SW+I G FG LAE VDPKQLGF F+ YL+FT Sbjct: 62 INDSKRQNTFGTTAFGAFALFWFAVGMSWMINAGTFGQGLAEAVDPKQLGFAFIAYLIFT 121 Query: 130 LFMTLGAVEANRXXXXXXXXXXXXXXXXTMDSFGVAAEFFHKLAACSELAIGIVSLYGCG 189 +FMT+GA E N+ +++SF + EF HKLA +EL + + YG Sbjct: 122 IFMTIGAAETNKVLFSVFFFIIFLFIGLSLNSFDILPEFSHKLAGIAELLASLTAFYGSA 181 Query: 190 ASVLNAHFGRQFLPVGDPLGIFKK 213 A+VLN HFGR+FLP+G P GIFKK Sbjct: 182 AAVLNPHFGREFLPIGKPFGIFKK 205 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,084,881,361 Number of extensions: 38307875 Number of successful extensions: 126084 Number of sequences better than 1.0e-05: 396 Number of HSP's gapped: 125620 Number of HSP's successfully gapped: 396 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)