BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0006.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3DJV8.1 A3DJV8_CLOTH UbiA prenyltransferase 287 9e-76 B4BG95.1 B4BG95_CLOTM UbiA prenyltransferase 287 1e-75 C1I934.1 C1I934_9CLOT UbiA prenyltransferase 258 4e-67 A0ALX1.1 A0ALX1_LISW6 Complete genome EC=2.5.1.- 207 1e-51 Q8Y438.1 Q8Y438_LISMO Lmo2635 protein 204 7e-51 >A3DJV8.1 A3DJV8_CLOTH UbiA prenyltransferase Length = 320 Score = 287 bits (735), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 146/313 (46%), Positives = 189/313 (60%), Gaps = 1/313 (0%) Query: 7 SFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNYYDY 66 SFL+ VE+ TK+ASM+PF+LGT+YA+YRF F V F LMF+SLLSFDM TTA+NNY+DY Sbjct: 5 SFLKLVEIKTKIASMVPFMLGTIYAIYRFNAFNVKNFLLMFISLLSFDMVTTALNNYFDY 64 Query: 67 KKAAKTHGYGYETHNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXX 126 K+A K GY YE HNAIV KL E T Sbjct: 65 KRARKKEGYNYEQHNAIVRDKLTEPMVITVILVLLGIAILFGVLLYLNTNIIVLLVGAIS 124 Query: 127 XXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSEGWASLHI 185 YSFGP+PISRMPLGE+FSG FMGFVIIF+SA++H D+ ++ L W SL + Sbjct: 125 FAVGIVYSFGPLPISRMPLGEVFSGFFMGFVIIFVSAFVHIYDRNIILLTLEGQWLSLRL 184 Query: 186 HISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFRLLYY 245 + EVL LF F+VPA+ GIA IMLANNICD++DDM+N+RYTLP+YIG++ AL LF LYY Sbjct: 185 NAMEVLALFAFAVPAVCGIANIMLANNICDVDDDMENKRYTLPIYIGKEKALWLFETLYY 244 Query: 246 ISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLMSVAR 305 I+F D F +KQ K TF L+VKNF+ + ++ Sbjct: 245 IAFVDIIILAVFRIVSPIVLLTLLVFIPVRRNIGLFRKKQTKKDTFELAVKNFVAICGSQ 304 Query: 306 IAVLGAAILLKVL 318 ++G +I+ ++ Sbjct: 305 FMLVGISIIFSLI 317 >B4BG95.1 B4BG95_CLOTM UbiA prenyltransferase Length = 320 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 145/313 (46%), Positives = 189/313 (60%), Gaps = 1/313 (0%) Query: 7 SFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNYYDY 66 SFL+ VE+ TK+ASM+PF+LGT+YA+YRF F V F LMF+SLLSFDM TTA+NNY+DY Sbjct: 5 SFLKLVEIKTKIASMVPFMLGTIYAIYRFNAFNVKNFLLMFISLLSFDMVTTALNNYFDY 64 Query: 67 KKAAKTHGYGYETHNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXX 126 K+A K GY YE HNAIV KL E T Sbjct: 65 KRARKKEGYNYEQHNAIVRDKLTEPMVITVILVLLGIAVLFGVLLYLNTNIIVLLVGAIS 124 Query: 127 XXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSEGWASLHI 185 YSFGP+PISRMPLGE+FSG FMGFVIIF+SA++H D+ ++ L W SL + Sbjct: 125 FAVGIVYSFGPLPISRMPLGEVFSGFFMGFVIIFVSAFVHIYDRNIILLTLEGQWLSLRL 184 Query: 186 HISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFRLLYY 245 + EVL LF F+VPA+ GIA IMLANNICD++DDM+N+RYTLP+YIG++ AL LF LYY Sbjct: 185 NAMEVLALFAFAVPAVCGIANIMLANNICDVDDDMENKRYTLPIYIGKEKALWLFETLYY 244 Query: 246 ISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLMSVAR 305 I+F D F +KQ K TF L+VKNF+ + ++ Sbjct: 245 IAFVDIIILAVFRIVSPIVLLTLLVFIPVRRNIGLFRKKQTKKDTFELAVKNFVAICGSQ 304 Query: 306 IAVLGAAILLKVL 318 ++G +++ ++ Sbjct: 305 FMLVGISVIFSLI 317 >C1I934.1 C1I934_9CLOT UbiA prenyltransferase Length = 319 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 179/302 (59%), Gaps = 2/302 (0%) Query: 5 VKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNYY 64 + SFL+ VE+ TKVAS++PFLLGT Y+LYR+++F + +MF+S++ FDM TTAINNY Sbjct: 3 IGSFLKLVEIQTKVASVIPFLLGTFYSLYRYDNFNIKNAIIMFLSMIIFDMTTTAINNYM 62 Query: 65 DYKKAAKTHGYGYETHNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXX 124 DY KA K GYGYETHNAIV Y L T Sbjct: 63 DYAKAVKKEGYGYETHNAIVSYNLNPKVVRITIYFMLILATALGLLLVKNTNIIVLLIGA 122 Query: 125 XXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSE-GWAS 182 YSFGPIPISR P GE+FSGL MGF+I F++ YIH D ++++ F+ S Sbjct: 123 VSFVIGITYSFGPIPISRTPFGEIFSGLAMGFIITFLTIYIHIFDLGILSINFNNLSNIS 182 Query: 183 LHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFRL 242 ++ +I E++Y+F S+PAI+GI+ IML NNICDI++D++N+RYTLP+YIG++NAL LF+ Sbjct: 183 INFNIIELIYIFIVSLPAIMGISNIMLVNNICDIDEDIENKRYTLPIYIGKENALKLFKW 242 Query: 243 LYYISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLMS 302 LYYI F F + Q K TFIL+VKNF++M+ Sbjct: 243 LYYIGFIAIVVGVLLRILPIVSIVTLLVLKVINKNINKFNKIQTKKDTFILAVKNFVVMN 302 Query: 303 VA 304 V Sbjct: 303 VT 304 >A0ALX1.1 A0ALX1_LISW6 Complete genome EC=2.5.1.- Length = 319 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 171/315 (54%), Gaps = 2/315 (0%) Query: 4 NVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNY 63 ++ SFL+ VE+ TK+AS+ PF+LGTL+ +Y+++ F L + F S+L FD+ TTAINNY Sbjct: 2 SIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPLNTLIFFGSMLIFDLTTTAINNY 61 Query: 64 YDYKKAAKTHGYGYE-THNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXX 122 DY+KA H Y Y T N I +++E T T Sbjct: 62 MDYRKATDNHDYDYRTTSNVIGQEQIRERTVIITIFLMFFIATGLGVWLVFRTDLLVLLI 121 Query: 123 XXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSEGWA 181 Y+FGP+P+SRMPLGE+FSG+ MGF I F++ Y+++ D + LL+ Sbjct: 122 GFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMV 181 Query: 182 SLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFR 241 ++ ++ E++ + S+P I IA IMLANN+CD+++D+ N RYTLP YIGRK +LLF Sbjct: 182 TIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFN 241 Query: 242 LLYYISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLM 301 LYY SF F ++Q K+ TF++ ++NF+L+ Sbjct: 242 GLYYASFLAIIISVIVNFLHPVMLLSLLAIYPVYRNLVKFNKEQVKSKTFVIGIRNFVLI 301 Query: 302 SVARIAVLGAAILLK 316 + ++ +++++ Sbjct: 302 NATLTILMAVSVIIQ 316 >Q8Y438.1 Q8Y438_LISMO Lmo2635 protein Length = 319 Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 171/317 (53%), Gaps = 2/317 (0%) Query: 4 NVKSFLQFVELPTKVASMLPFLLGTLYALYRFEDFYVLRFALMFVSLLSFDMATTAINNY 63 ++ SFL+ VE+ TK+AS+ PF+LGTL+ +Y+++ F + ++F S+L FD+ TTAINNY Sbjct: 2 SIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPINTLIIFGSMLIFDLTTTAINNY 61 Query: 64 YDYKKAAKTHGYGYET-HNAIVHYKLKESTXXXXXXXXXXXXXXXXXXXXXETXXXXXXX 122 DY+KA H Y Y T N I ++ T T Sbjct: 62 MDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFIATGLGVWLVFRTDLLVLLI 121 Query: 123 XXXXXXXXXXYSFGPIPISRMPLGELFSGLFMGFVIIFISAYIHS-DQTVVTLLFSEGWA 181 Y+FGP+P+SRMPLGE+FSG+ MGF I F++ Y+++ D + LL+ Sbjct: 122 GFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMV 181 Query: 182 SLHIHISEVLYLFWFSVPAILGIAGIMLANNICDIEDDMDNRRYTLPVYIGRKNALLLFR 241 ++ ++ E++ + S+P I IA IMLANN+CD+++D+ N RYTLP YIGRK +LLF Sbjct: 182 TIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFN 241 Query: 242 LLYYISFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFEEKQEKATTFILSVKNFMLM 301 LYY SF F ++Q K+ TF++ ++NF+L+ Sbjct: 242 TLYYASFLAVVVSVAINFLHPIMLLSLITIYPVYRNLVKFNKEQVKSKTFVIGIRNFVLI 301 Query: 302 SVARIAVLGAAILLKVL 318 + ++ +++L+ L Sbjct: 302 NATLTILMAVSVVLQQL 318 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,356,231,338 Number of extensions: 45822945 Number of successful extensions: 138950 Number of sequences better than 1.0e-05: 319 Number of HSP's gapped: 138319 Number of HSP's successfully gapped: 361 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)