BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0005.p (324 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7DRB0.1 B7DRB0_9BACL Oxidoreductase domain protein 351 6e-95 C1PU72.1 C1PU72_ALIAC Predicted dehydrogenase 347 1e-93 B1DAD0.1 B1DAD0_9BACL Oxidoreductase domain protein 341 6e-92 B3K6X7.1 B3K6X7_9BACI Oxidoreductase domain protein 329 2e-88 B3KIR9.1 B3KIR9_9BACI Oxidoreductase domain protein 329 3e-88 >B7DRB0.1 B7DRB0_9BACL Oxidoreductase domain protein Length = 330 Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 219/324 (67%), Gaps = 3/324 (0%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA ++P I SETG + A+ASR K+ VA FG +AYGSYEELL DP+VD Sbjct: 9 LGCADIAVRKLIPGILSSETGELHAIASRDRAKAEDVARRFGAPRAYGSYEELLQDPDVD 68 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 AVYIPLPNHLH+ W +RAAEAGKHVLCEKPI L++REA MV+ACR GVHLAEA+MYRH Sbjct: 69 AVYIPLPNHLHKPWTVRAAEAGKHVLCEKPIGLDAREAQAMVDACRAHGVHLAEAFMYRH 128 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HPR V E++ SG IG +R IRG+FT+N+A D SNIR++ WGGGSLYDVGCYP+SAAR Sbjct: 129 HPRYRRVLELVQSGAIGPVRGIRGSFTFNNAADRSNIRYRRDWGGGSLYDVGCYPISAAR 188 Query: 181 LLFGAEPEAATVQAIFSPEHDNVDMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLGTEG 240 L+ G EP AAT A FSP+HD VDM +GLVEF GGVSL FDCGMWA R +EV+G +G Sbjct: 189 LILGEEPVAATAHAFFSPDHDGVDMYLAGLVEFAGGVSLTFDCGMWAAERNEIEVVGADG 248 Query: 241 RIELPMPFNARFDDAEFFVYSGGEVRRARATGANPYVCQXXXX-XXXXXXXXXXXXXEDP 299 R+ L F + V S R +PY + ED Sbjct: 249 RLILERAFLG--EPVTLRVISPDGDRVETFDPLDPYALEVDDLGRAVLEGKPLRFPPEDA 306 Query: 300 VLNMALIETCLASARTRQRISLKQ 323 V NM +++ CL SART +R+++++ Sbjct: 307 VANMRVLDACLLSARTGRRVAIER 330 >C1PU72.1 C1PU72_ALIAC Predicted dehydrogenase Length = 330 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 218/324 (67%), Gaps = 3/324 (0%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA ++P I SETG + A+ASR K+ VA FG +AYGSYEELL DP+VD Sbjct: 9 LGCADIAVRKLIPGILSSETGELYAIASRDGAKAEDVARRFGAPRAYGSYEELLQDPDVD 68 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 AVYIPLPNHLH+ W I+AAEAGKHVLCEKPIAL++REA MV+ACR GVHLAEA+MYRH Sbjct: 69 AVYIPLPNHLHKPWTIQAAEAGKHVLCEKPIALDAREAQAMVDACRAHGVHLAEAFMYRH 128 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HPR V E++ SG IG +R IRG+FT+N+A D NIR++ WGGGSLYDVGCYP+SAAR Sbjct: 129 HPRYNRVLELVQSGAIGPVRGIRGSFTFNNAADRGNIRYRRDWGGGSLYDVGCYPISAAR 188 Query: 181 LLFGAEPEAATVQAIFSPEHDNVDMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLGTEG 240 L+ G EP AAT A FSP+HD VDM +GLVEF GGVSL FDCGMWA R +EV+G G Sbjct: 189 LILGDEPVAATAHAFFSPDHDGVDMYLAGLVEFAGGVSLTFDCGMWAAERNEIEVVGANG 248 Query: 241 RIELPMPFNARFDDAEFFVYSGGEVRRARATGANPYVCQXXXX-XXXXXXXXXXXXXEDP 299 R+ L F + V S R +PY + ED Sbjct: 249 RLILERAFLG--EPVTLRVLSPEGERVETFDPLDPYALEVDDLGRAILEGKPLRFPPEDA 306 Query: 300 VLNMALIETCLASARTRQRISLKQ 323 V NM +++ CL SART +R+++++ Sbjct: 307 VANMRVLDACLLSARTGRRVAIER 330 >B1DAD0.1 B1DAD0_9BACL Oxidoreductase domain protein Length = 333 Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 170/324 (52%), Positives = 220/324 (67%), Gaps = 2/324 (0%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA +V+P + S++ + A+ASR +K+ AEE + AY SYE LLAD +D Sbjct: 10 LGCANIAKNAVIPGLHLSDSNEVAAIASRDGEKARQTAEELNIPTAYDSYEALLADSSID 69 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 +YIPLPNHLH+EW IRAAEAGKH+LCEKP+ALN+ EAAEM EA +AGV L+EA+MYR+ Sbjct: 70 VIYIPLPNHLHKEWAIRAAEAGKHILCEKPLALNAHEAAEMAEAADKAGVLLSEAFMYRY 129 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HPR +++E+IASG IG +R IR FT+N+ D+ N+RF+ AWGGGS+YDVGCYP++ AR Sbjct: 130 HPRYQQIKELIASGAIGQIRGIRSAFTFNNPNDSKNVRFRKAWGGGSIYDVGCYPINVAR 189 Query: 181 LLFGAEPEAATVQAIFSPEHDNVDMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLGTEG 240 LL EPEA TV A+FSPEHD+VDMMASGL+EF G VSL FDCGMWA R LE+LGT+G Sbjct: 190 LLLDKEPEAVTVNALFSPEHDDVDMMASGLIEFDGNVSLTFDCGMWAAFRNPLEILGTDG 249 Query: 241 RIELPMPF-NARFDDAEFFVYSGGEVRRARATGANPYVCQXXXXXXXXXX-XXXXXXXED 298 IE+P F + + ++ + GE R+ N Y Q D Sbjct: 250 IIEVPSAFVTPTAESSHIYLNANGERRQIEVPYVNSYTAQADSIARSVANGTPLEFPTTD 309 Query: 299 PVLNMALIETCLASARTRQRISLK 322 + NM +I+ CL SAR R+ LK Sbjct: 310 AIRNMKVIDACLLSAREHARVQLK 333 >B3K6X7.1 B3K6X7_9BACI Oxidoreductase domain protein Length = 331 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 172/322 (53%), Positives = 216/322 (67%), Gaps = 1/322 (0%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA SV+P +Q+S + A+ASR K+ AEE + AYGSYE LL D +D Sbjct: 10 LGCASIAKRSVIPGLQQSRLNEVVAIASRDQAKAEQTAEELKIPTAYGSYESLLEDSSID 69 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 AVYIPLPNHLH+EW IRAAEAGKH+LCEKP+AL EAAEM +A AGV LAEA+MYR+ Sbjct: 70 AVYIPLPNHLHKEWSIRAAEAGKHILCEKPLALTEAEAAEMADAAATAGVILAEAFMYRY 129 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HPR ++E+I SG IG++R IR FT+N + + N+RF+ WGGGS+YDVGCYP++AAR Sbjct: 130 HPRYDLLKEMIDSGAIGEIRGIRSAFTFNSSANHGNVRFRKDWGGGSIYDVGCYPINAAR 189 Query: 181 LLFGAEPEAATVQAIFSPEHDNVDMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLGTEG 240 +L EPEA TVQA FSPEHD+VDMMASGL+EF G V+L FDCGMWA R LE++GT+G Sbjct: 190 ILLDKEPEAVTVQAFFSPEHDHVDMMASGLIEFEGNVALTFDCGMWAAYRNPLEIVGTDG 249 Query: 241 RIELPMPFNARFDDAEFFVYSGGEVRRARATGANPYVCQ-XXXXXXXXXXXXXXXXXEDP 299 IE+P ++ + A FF+ +G + AN Y Q ED Sbjct: 250 LIEVPYAYSLPENGANFFLTTGDGRKEIEVPHANAYSEQGDRIAEAVLYDKPLRYSTEDA 309 Query: 300 VLNMALIETCLASARTRQRISL 321 V NM +I+ CL SA R RI L Sbjct: 310 VRNMKVIDACLQSAHERTRIEL 331 >B3KIR9.1 B3KIR9_9BACI Oxidoreductase domain protein Length = 334 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 165/325 (50%), Positives = 214/325 (65%), Gaps = 3/325 (0%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 M A+IA S++P I +SE + AVASR DK+ +AE + + YGSY+ELLADP++D Sbjct: 10 MSTARIARNSMIPGILKSERCEVGAVASRNADKARELAERYHIKTYYGSYDELLADPDID 69 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 AVYIPLPNHLH+ W I+AAEAGKHVLCEKP AL + EM EA + V AEA+MYR+ Sbjct: 70 AVYIPLPNHLHKPWTIKAAEAGKHVLCEKPAALTETDVREMAEAAKAHNVLFAEAFMYRY 129 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HP+ A V+EII SGEIG LR I G+FT+N+A D SN+R+ GGGS+YDVGCYP+SAAR Sbjct: 130 HPKHARVREIIESGEIGHLRGIHGSFTFNNAEDKSNVRYSKDMGGGSIYDVGCYPISAAR 189 Query: 181 LLFGAEPEAATVQAIFSPEHDNVDMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLGTEG 240 +++G EP+A T A FS EHD VDMM G++EF G+ L FDCGMW Y+R LE+ GT+G Sbjct: 190 MIYGQEPKAVTAHAFFSEEHDGVDMMVHGMMEFDNGLGLTFDCGMWTYSRCSLEIAGTDG 249 Query: 241 RIELPMPFN-ARFDD-AEFFVYSGGEVRRARATGANPYVCQXXXXXXXXXXXX-XXXXXE 297 RIELP F R +D A+ FV++ R + N + Q E Sbjct: 250 RIELPSAFGWERMEDMAQIFVHTAKGTREEKVGIYNHFALQADAMAAAVMDGAPLPYGPE 309 Query: 298 DPVLNMALIETCLASARTRQRISLK 322 D + N+ IE CL +AR+ R+ +K Sbjct: 310 DAISNIRAIEACLQAARSSSRVEIK 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,782,370,747 Number of extensions: 70710682 Number of successful extensions: 176725 Number of sequences better than 1.0e-05: 4738 Number of HSP's gapped: 174662 Number of HSP's successfully gapped: 4740 Length of query: 324 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 188 Effective length of database: 1,779,438,163 Effective search space: 334534374644 Effective search space used: 334534374644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)