BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0065.p
         (48 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL81.1 B3KL81_9BACI Putative uncharacterized protein                 71   2e-11
B1DJ77.1 B1DJ77_9BACL Putative uncharacterized protein                 63   1e-08
C1PYJ0.1 C1PYJ0_ALIAC Putative uncharacterized protein                 57   4e-07
B7DUB9.1 B7DUB9_9BACL Putative uncharacterized protein                 57   5e-07

>B3KL81.1 B3KL81_9BACI Putative uncharacterized protein
          Length = 48

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%)

Query: 1  LRVKVRIICKQCGESYILRGSKEQGVIQTGFKQCLCNSSSGFEIEE 46
          +RVKV+I+CK CGE ++LRG KEQG I+TGFKQCLCN+   F+IEE
Sbjct: 1  MRVKVKILCKDCGERFVLRGKKEQGRIETGFKQCLCNNRDHFDIEE 46


>B1DJ77.1 B1DJ77_9BACL Putative uncharacterized protein
          Length = 51

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 37/47 (78%)

Query: 2  RVKVRIICKQCGESYILRGSKEQGVIQTGFKQCLCNSSSGFEIEERA 48
          RVKV I C  CGE ++LRG +E+G+I TGFKQC+CN+++  +IEE +
Sbjct: 4  RVKVTIRCNVCGEKFVLRGKREKGMIDTGFKQCICNNTNDLDIEEHS 50


>C1PYJ0.1 C1PYJ0_ALIAC Putative uncharacterized protein
          Length = 78

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 38/45 (84%), Gaps = 1/45 (2%)

Query: 2  RVKVRIICKQCGESYILRGSKE-QGVIQTGFKQCLCNSSSGFEIE 45
          R+KV I C++CGE++ILRG+++ +G I+TGFK+CLC++   F+IE
Sbjct: 31 RIKVMIRCRKCGETFILRGTRDSKGNIETGFKRCLCDNDKDFDIE 75


>B7DUB9.1 B7DUB9_9BACL Putative uncharacterized protein
          Length = 65

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 38/45 (84%), Gaps = 1/45 (2%)

Query: 2  RVKVRIICKQCGESYILRGSKE-QGVIQTGFKQCLCNSSSGFEIE 45
          R+KV I C++CGE++ILRG+++ +G I+TGFK+CLC++   F+IE
Sbjct: 18 RIKVMIRCRKCGETFILRGTRDSKGNIETGFKRCLCDNDKDFDIE 62


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 256,408,241
Number of extensions: 6251149
Number of successful extensions: 15340
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 15341
Number of HSP's successfully gapped: 5
Length of query: 48
Length of database: 3,060,696,203
Length adjustment: 21
Effective length of query: 27
Effective length of database: 2,862,854,888
Effective search space: 77297081976
Effective search space used: 77297081976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)