BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0062.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL86.1 B3KL86_9BACI Cytidylate kinase EC=2.7.4.14 314 5e-84 B1DJ73.1 B1DJ73_9BACL Cytidylate kinase EC=2.7.4.14 241 3e-62 C2EFI0.1 C2EFI0_9LACO Cytidylate kinase EC=2.7.4.14 213 1e-53 Q1WTS4.1 KCY_LACS1 Cytidylate kinase EC=2.7.4.14 213 1e-53 B7B131.1 B7B131_9FIRM Putative uncharacterized protein 212 2e-53 >B3KL86.1 B3KL86_9BACI Cytidylate kinase EC=2.7.4.14 Length = 226 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 157/224 (70%), Positives = 187/224 (83%), Gaps = 1/224 (0%) Query: 4 QGAHTYDRINVAIDGPAGAGKSTVARLVARKLSYIYVDTGAMYRAVTWYMIREGIPAEED 63 QG DRIN+AIDGPAGAGKSTVAR+VA +L YIYVDTGAMYRAVTW+M+ +GI E Sbjct: 4 QGTGYRDRINIAIDGPAGAGKSTVARMVASRLQYIYVDTGAMYRAVTWFMLNQGISPENP 63 Query: 64 QQVDLRVRDMVIELIPEQDVQKVLINGEDVTPHIRSLQVSGQVSQYSKIEGVRSRLSHLQ 123 ++V ++MVIEL P ++ Q V +NGEDVTP+IRS QVS VSQY++IEG+R +L LQ Sbjct: 64 EKVLQHAQNMVIELKPHENGQMVWLNGEDVTPYIRSHQVSAVVSQYARIEGLRIKLVRLQ 123 Query: 124 RQMALRKGVVMDGRDIGTTVLPDAEVKIFMTASVEERALRRYKELKDAETVTLQQLEHDI 183 +QMAL KGVVMDGRDIGTTVLPDAEVKIFMTASV+ERALRR+ EL D E +TL+QLE DI Sbjct: 124 QQMALDKGVVMDGRDIGTTVLPDAEVKIFMTASVKERALRRFHELSD-EGITLEQLERDI 182 Query: 184 AMRDRLDEGREISPLRRAEDAILLDTTHMDIHQAVEAIVSHCRS 227 A RDRLD+ RE+SPLR AEDAI+LDTTHMDI+Q VEAI+S+C + Sbjct: 183 AERDRLDQEREVSPLRCAEDAIILDTTHMDINQVVEAILSYCET 226 >B1DJ73.1 B1DJ73_9BACL Cytidylate kinase EC=2.7.4.14 Length = 234 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 127/218 (58%), Positives = 162/218 (74%) Query: 10 DRINVAIDGPAGAGKSTVARLVARKLSYIYVDTGAMYRAVTWYMIREGIPAEEDQQVDLR 69 DRIN+AIDGPAGAGKSTVAR VA +L YIY+DTGAMYRAVT R GI +++++ Sbjct: 11 DRINIAIDGPAGAGKSTVARKVAEQLDYIYIDTGAMYRAVTLSAQRAGIEPLDNERLAEH 70 Query: 70 VRDMVIELIPEQDVQKVLINGEDVTPHIRSLQVSGQVSQYSKIEGVRSRLSHLQRQMALR 129 R + I+L P + Q V +NGE++T IRS +V+ VS + E VR LS LQRQ+A R Sbjct: 71 ARTLDIKLAPGEKGQAVFLNGENITDLIRSREVTLAVSHIAANETVRELLSKLQRQLAER 130 Query: 130 KGVVMDGRDIGTTVLPDAEVKIFMTASVEERALRRYKELKDAETVTLQQLEHDIAMRDRL 189 KGVVMDGRDIG+ VLP+AE+KIF+TASV+ERA RRYKE+ +++TL+QLE +IA RDRL Sbjct: 131 KGVVMDGRDIGSHVLPNAELKIFLTASVQERAQRRYKEIAGTQSITLEQLEREIAERDRL 190 Query: 190 DEGREISPLRRAEDAILLDTTHMDIHQAVEAIVSHCRS 227 DE REISPL A+DAI+LD+T M I + +IV R+ Sbjct: 191 DEQREISPLICAKDAIVLDSTSMSIDEVAASIVKLSRT 228 >C2EFI0.1 C2EFI0_9LACO Cytidylate kinase EC=2.7.4.14 Length = 224 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 113/226 (50%), Positives = 156/226 (69%), Gaps = 6/226 (2%) Query: 11 RINVAIDGPAGAGKSTVARLVARKLSYIYVDTGAMYRAVTWYMIREGIPAEEDQQVDLRV 70 ++ +AIDGPA AGKSTVA+LVA+KL YIY DTGAMYRAVT+ ++ I ++D+ + + Sbjct: 4 KLQIAIDGPASAGKSTVAKLVAKKLGYIYCDTGAMYRAVTYAALKANISLDDDEALKNLL 63 Query: 71 RDMVIELIPEQDVQKVLINGEDVTPHIRSLQVSGQVSQYSKIEGVRSRLSHLQRQMALRK 130 +D +E +P + QKV +NGE+VT IR+ ++ VS S VR L+H Q+++A Sbjct: 64 QDFKLEFVPAEPEQKVFVNGEEVTQIIRTPDITNNVSLVSAQPSVRQDLTHRQQEIADNG 123 Query: 131 GVVMDGRDIGTTVLPDAEVKIFMTASVEERALRRYKE-LKDAETVTLQQLEHDIAMRDRL 189 G+VMDGRDIGTTVLP+AEVKIF+ ASVE+RALRRYKE + L+ LE +IA RD Sbjct: 124 GIVMDGRDIGTTVLPNAEVKIFLVASVEQRALRRYKENIAKGIDTPLEVLEKEIAERDYK 183 Query: 190 DEGREISPLRRAEDAILLDTTHMDIHQAVEAIVSHCRSYVDGERNH 235 D R+ISPL +A+DA+ +DTT + I + V I++ + ERNH Sbjct: 184 DSHRKISPLVQAKDAVKVDTTPLTIDEVVNEIMN-----IIEERNH 224 >Q1WTS4.1 KCY_LACS1 Cytidylate kinase EC=2.7.4.14 Length = 224 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 113/226 (50%), Positives = 156/226 (69%), Gaps = 6/226 (2%) Query: 11 RINVAIDGPAGAGKSTVARLVARKLSYIYVDTGAMYRAVTWYMIREGIPAEEDQQVDLRV 70 ++ +AIDGPA AGKSTVA+LVA+KL YIY DTGAMYRAVT+ ++ I ++D+ + + Sbjct: 4 KLQIAIDGPASAGKSTVAKLVAKKLGYIYCDTGAMYRAVTYAALKANISLDDDEALKNLL 63 Query: 71 RDMVIELIPEQDVQKVLINGEDVTPHIRSLQVSGQVSQYSKIEGVRSRLSHLQRQMALRK 130 +D +E +P + QKV +NGE+VT IR+ ++ VS S VR L+H Q+++A Sbjct: 64 QDFKLEFVPAEPEQKVFVNGEEVTQIIRTPDITNNVSLVSAQPSVRQDLTHRQQEIADNG 123 Query: 131 GVVMDGRDIGTTVLPDAEVKIFMTASVEERALRRYKE-LKDAETVTLQQLEHDIAMRDRL 189 G+VMDGRDIGTTVLP+AEVKIF+ ASVE+RALRRYKE + L+ LE +IA RD Sbjct: 124 GIVMDGRDIGTTVLPNAEVKIFLVASVEQRALRRYKENIAKGIDTPLEVLEKEIAERDYK 183 Query: 190 DEGREISPLRRAEDAILLDTTHMDIHQAVEAIVSHCRSYVDGERNH 235 D R+ISPL +A+DA+ +DTT + I + V I++ + ERNH Sbjct: 184 DSHRKISPLVQAKDAVKVDTTPLTIDEVVNEIMN-----IIEERNH 224 >B7B131.1 B7B131_9FIRM Putative uncharacterized protein Length = 223 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 115/223 (51%), Positives = 154/223 (69%), Gaps = 2/223 (0%) Query: 5 GAHTYDRINVAIDGPAGAGKSTVARLVARKLSYIYVDTGAMYRAVTWYMIREGIPAEEDQ 64 G ++ VAIDGPAGAGKSTVA+L A++L Y Y+DTGAMYRAV W ++++G D+ Sbjct: 2 GESVLKKLVVAIDGPAGAGKSTVAQLAAKELGYTYIDTGAMYRAVAWKVLQQGGEVT-DE 60 Query: 65 QVDLRVRDMVIELIPEQDVQKVLINGEDVTPHIRSLQVSGQVSQYSKIEGVRSRLSHLQR 124 ++ + D+ ++L E V ++G+DVT IR+ +VS VSQ + + VR ++ LQR Sbjct: 61 KILAVIPDIDVDLSYENGKTTVRVDGQDVTGEIRTPEVSHIVSQVAALGPVREKMVDLQR 120 Query: 125 QMALRKGVVMDGRDIGTTVLPDAEVKIFMTASVEERALRRYKELKD-AETVTLQQLEHDI 183 +MA R GV+MDGRDI T VLP A+VKI++TAS+ ERA RRYKEL++ V L +EHDI Sbjct: 121 KMAERGGVLMDGRDIATNVLPGADVKIYLTASIAERANRRYKELREKGLAVNLADIEHDI 180 Query: 184 AMRDRLDEGREISPLRRAEDAILLDTTHMDIHQAVEAIVSHCR 226 A RD+ D REISPL +AEDA LLDTT M I + V I+ CR Sbjct: 181 AARDKADMEREISPLVQAEDATLLDTTGMTIPEVVARIIGMCR 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,275,402,753 Number of extensions: 49297998 Number of successful extensions: 301655 Number of sequences better than 1.0e-05: 1423 Number of HSP's gapped: 299225 Number of HSP's successfully gapped: 1426 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)