BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0056.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL90.1 B3KL90_9BACI Putative uncharacterized protein 189 1e-46 B1DJ66.1 B1DJ66_9BACL Putative uncharacterized protein 164 5e-39 Q9KCD3.1 Y1639_BACHD UPF0078 membrane protein BH1639 143 1e-32 C0ZCB7.1 C0ZCB7_BREBN Acyl-phosphate glycerol-3-phosphate acyltr... 124 3e-27 C1PXL0.1 C1PXL0_ALIAC Conserved hypothetical integral membrane p... 124 7e-27 >B3KL90.1 B3KL90_9BACI Putative uncharacterized protein Length = 208 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/168 (58%), Positives = 112/168 (66%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXX 84 ++LKG+DIRQ+GSGNAGATNTLRV+GKGPAILVL LDV+KGI Sbjct: 25 KILKGIDIRQHGSGNAGATNTLRVLGKGPAILVLALDVIKGIAAVWIGRWLGGDNAWLPG 84 Query: 85 XXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGS 144 HNWPLYF FRGGKGIAT IGV+ATL F P T+YVSLGS Sbjct: 85 LCGIAAIIGHNWPLYFRFRGGKGIATAIGVLATLCFIPALIAGVIAILSIVFTRYVSLGS 144 Query: 145 LLFVALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGREN 192 L+FV LTPVFL+ ++ P W SLII +FAFWRHRSNIVK+ QGREN Sbjct: 145 LIFVVLTPVFLLIADYSWPIFWTSLIICVFAFWRHRSNIVKLVQGREN 192 >B1DJ66.1 B1DJ66_9BACL Putative uncharacterized protein Length = 201 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 86/174 (49%), Positives = 110/174 (63%), Gaps = 1/174 (0%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXX-XX 83 R++KG+DIR++GSGNAGATNT+RV+GKGP +L +LD KGI Sbjct: 25 RLVKGIDIREHGSGNAGATNTIRVLGKGPGLLCFVLDFGKGIAAVFIGRWLGLDGVDWTP 84 Query: 84 XXXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLG 143 HNWP+YF+F+GGKGIATTIG +A L F P T+YVSLG Sbjct: 85 ALCGLAAIMGHNWPIYFNFKGGKGIATTIGAIAALAFVPAIIAGVVTIIVIAITRYVSLG 144 Query: 144 SLLFVALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSK 197 SL+F ALTPV + ++AP L SLI+ +FAF RHR+NIVK+ QG ENK+G+K Sbjct: 145 SLIFAALTPVLISIFFYSAPVLTVSLILCVFAFVRHRTNIVKLLQGTENKLGAK 198 >Q9KCD3.1 Y1639_BACHD UPF0078 membrane protein BH1639 Length = 206 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 107/178 (60%), Gaps = 5/178 (2%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKG-IXXXXXXXXXXXXXXXXX 83 + +K VDIRQ+GSGNAGATNTLRV+G GPA+ VL+LD+LKG I Sbjct: 25 KKIKKVDIRQHGSGNAGATNTLRVLGVGPAVTVLLLDILKGVIAVVVTVQLTPDGDGWFA 84 Query: 84 XXXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLG 143 HNWP+Y+ FRGGKG+ATTIGV+A+LV T+YVSLG Sbjct: 85 AAAGIAAIIGHNWPIYYGFRGGKGVATTIGVLASLVPLAAVLAGVIAIGSIVWTRYVSLG 144 Query: 144 SLLFVALTPVFLI----FTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSK 197 SLLFV LT + + + G+ ++ ++I+AI + WRHRSNI ++ G ENK+G K Sbjct: 145 SLLFVTLTALLVAVLSQWFGYPVAYIYLTIIVAILSMWRHRSNIQRLLSGTENKLGRK 202 >C0ZCB7.1 C0ZCB7_BREBN Acyl-phosphate glycerol-3-phosphate acyltransferase Length = 200 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 93/173 (53%), Gaps = 1/173 (0%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXX 84 + + G+DIR +GSGNAGATNTLRV+GKGP I VL+LD +KGI Sbjct: 23 KKVAGIDIRSHGSGNAGATNTLRVLGKGPGIAVLLLDAVKGI-AAMGLTHLMTGDPAAYA 81 Query: 85 XXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGS 144 HNWP++F FRGGKGIATT+GV+ T++VSLGS Sbjct: 82 VAGLFVIAGHNWPIFFGFRGGKGIATTLGVVLGFSPLAFLIAAVMAVVVIAITRFVSLGS 141 Query: 145 LLFVALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSK 197 L+ V + P L +W SL IAIFA+ RH +NI + G E K+G K Sbjct: 142 LVIVTVIPFTLYLLDKPISFIWASLAIAIFAYIRHYNNIRNLLSGNERKLGEK 194 >C1PXL0.1 C1PXL0_ALIAC Conserved hypothetical integral membrane protein TIGR00023 Length = 204 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 92/179 (51%) Query: 25 RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXX 84 R + G DIR GSGNAGATNT+R +G +LVL+ D LKG Sbjct: 26 RWVSGRDIRSEGSGNAGATNTMRTIGLKWGVLVLLFDGLKGAIALWIAHAMAPHAMWALA 85 Query: 85 XXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGS 144 HNWP++F FRGGKGIATTIGV+ L T+YVSLGS Sbjct: 86 LSAVAVVVGHNWPVFFGFRGGKGIATTIGVLLWLAPLSAVIAGLVCLAVIAVTRYVSLGS 145 Query: 145 LLFVALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSKVKEGNR 203 L+FV L P+ + F S+++A+ A +RHRSNI ++ G E +I + EG R Sbjct: 146 LVFVCLVPILIAVFRFEGWTFAASVVLALLAVYRHRSNIHRLLHGTERRIFDRTSEGVR 204 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.144 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 848,983,598 Number of extensions: 24445836 Number of successful extensions: 69096 Number of sequences better than 1.0e-05: 846 Number of HSP's gapped: 67746 Number of HSP's successfully gapped: 862 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)