BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0054.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL92.1 B3KL92_9BACI Putative uncharacterized protein                133   6e-30
B1DJ64.1 B1DJ64_9BACL Putative uncharacterized protein                107   4e-22

>B3KL92.1 B3KL92_9BACI Putative uncharacterized protein
          Length = 91

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 74/91 (81%)

Query: 1  VSRDFSKDALNAINKKAGKNITEGAVKKLASTVKPGTTQNEAQLRQLIKQVSAMAKVPVS 60
          +S+ F KD LNAINKK+GK I+ GAV KLASTVKP T QNEAQLRQLIKQVSAMA +PVS
Sbjct: 1  MSKSFHKDVLNAINKKSGKKISSGAVNKLASTVKPSTMQNEAQLRQLIKQVSAMANIPVS 60

Query: 61 EATVQEIVNAVKKGGANSGTMESLMKMMMKK 91
          E T+QEIV AVKK G N   ME+LMKMMM K
Sbjct: 61 EDTIQEIVGAVKKSGMNPSNMEALMKMMMNK 91


>B1DJ64.1 B1DJ64_9BACL Putative uncharacterized protein
          Length = 102

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 70/90 (77%)

Query: 1   VSRDFSKDALNAINKKAGKNITEGAVKKLASTVKPGTTQNEAQLRQLIKQVSAMAKVPVS 60
           V++D SKD LNAINKK GKNI+E AVKKLA+ V   T +NE +LR+LIK VS MAKVPVS
Sbjct: 13  VAKDLSKDVLNAINKKTGKNISENAVKKLANGVSASTMKNEEELRKLIKNVSDMAKVPVS 72

Query: 61  EATVQEIVNAVKKGGANSGTMESLMKMMMK 90
           + T+ +IV AVK  G + G +ESL+KMM+K
Sbjct: 73  DKTMNDIVKAVKASGMSIGGIESLIKMMIK 102


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.306    0.119    0.297 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 394,122,044
Number of extensions: 10293654
Number of successful extensions: 44151
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 44155
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 126 (53.1 bits)