BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0051.p
         (205 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL94.1 B3KL94_9BACI Putative uncharacterized protein                116   1e-24
B1DMC9.1 B1DMC9_9BACL Putative uncharacterized protein                 62   3e-08

>B3KL94.1 B3KL94_9BACI Putative uncharacterized protein
          Length = 196

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 29  PPAWXXXXXXXXXXXXVTLNAAPHDIDLYADLQDAERLHDALSGYTVSGPEEDYSGGCFS 88
           P AW            V L   P DID+YAD    + LH+ L+   V  P  D  G   S
Sbjct: 24  PVAWLLGGSCCLLLQGVELGKPPRDIDIYADAGGIQPLHETLALLAVDAPRLDQEGIYSS 83

Query: 89  LRSCYSLGNTSIELIGGFEIGHGSWQYSVNIQRLL-AYAPVQDFAGIGLLRLMPAAHELI 147
           + S Y L    IEL+GGFE+      Y V I +LL   AP +    + + RLMP +HEL+
Sbjct: 84  ILSHYELEKVPIELVGGFEVNSEGSSYRVEIDQLLYPAAPARHIRDVTV-RLMPLSHELV 142

Query: 148 FNILRGRAERCDSIAAYLRQDLSAHLPLLQSLILDNGLDLSFQMELNQLLGVPP 201
           FN+LR R +R D+IA  + +D++ HLPLLQ L+  N L    +M L +L+G+ P
Sbjct: 143 FNVLRDRPDRYDAIAETMLRDMNQHLPLLQRLLSRNRLSEEHRMVLKRLIGLQP 196


>B1DMC9.1 B1DMC9_9BACL Putative uncharacterized protein
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 47  LNAAPHDIDLYADLQDAERLHDALSGYTVSGPEEDYSGGCFSLRSCYSLGNTSIELIGGF 106
           L   P+DIDLYAD +D + +++ L  Y     E    G   S+ S + +    +EL+GGF
Sbjct: 40  LQDKPNDIDLYADDEDYDLIYERLKPYASDTKELSECGNYRSILSHFVIEGVPVELVGGF 99

Query: 107 EIGHGSWQYSVNIQRLLAYAPVQDFAGIGL----LRLMPAAHELIFNILRGRAERCDSIA 162
            +     +Y   +++LL     Q     G     + ++P AHEL FN LR R +R   I 
Sbjct: 100 VVRAERSRYITEVRKLLKPYSEQFVVRNGQEEQHVPVVPLAHELWFNRLRQREDRLQMIV 159

Query: 163 AYLRQDLSAHLPLLQSLILDNGLDLSFQMELNQLLG 198
            +  ++ S H      L   N   +  + ++NQ L 
Sbjct: 160 DHYIKEESRHEAARLLLEQRNVFTIEARKQMNQRLS 195


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,215,021,303
Number of extensions: 47220593
Number of successful extensions: 84445
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 84443
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 76
Effective length of database: 1,845,385,268
Effective search space: 140249280368
Effective search space used: 140249280368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)