BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0050.p
         (103 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL95.1 B3KL95_9BACI Ferredoxin                                       80   8e-14
B1DMC8.1 B1DMC8_9BACL Putative uncharacterized protein                 60   5e-08

>B3KL95.1 B3KL95_9BACI Ferredoxin
          Length = 119

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 53/82 (64%)

Query: 3   GTPLLEAARKAGVALTTRCGGKAGCLMCKVKVEDQFAAGLQPPGDTERRKLGSLLVEGVX 62
            T +L+A+R+AGV + TRCGGKAGCLMCK+ V D+       P   E RKLG+ ++E   
Sbjct: 19  NTNVLDASRRAGVRIPTRCGGKAGCLMCKILVPDEERGHCSAPETKEIRKLGTSMMEQGY 78

Query: 63  XXXCQAAVWSNVTVHIPEDPLK 84
              CQ  + S++ V IPEDPLK
Sbjct: 79  RLSCQTRITSHLKVIIPEDPLK 100


>B1DMC8.1 B1DMC8_9BACL Putative uncharacterized protein
          Length = 85

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 17  LTTRCGGKAGCLMCKVKVEDQFAAGLQPPGDTERRKLGSLLVEGVXXXXCQAAVWSNVTV 76
           + TRCGG A C MCKVK+  +  + L P  D E+RKL  L  EG     CQA V   V V
Sbjct: 3   IQTRCGGNAACFMCKVKIRPE--SDLMPIADEEKRKLAGLEQEGY-RLACQAKVRGVVQV 59

Query: 77  HIPEDPLKXXXXXXXXXXXXGDEDELW 103
            +P DPL+             ++DELW
Sbjct: 60  DVPLDPLRAAVQKLLAKQAE-EKDELW 85


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 556,063,484
Number of extensions: 17324695
Number of successful extensions: 25277
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 25350
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 3,060,696,203
Length adjustment: 71
Effective length of query: 32
Effective length of database: 2,391,804,138
Effective search space: 76537732416
Effective search space used: 76537732416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)