BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0049.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DMC7.1 B1DMC7_9BACL Putative uncharacterized protein 193 1e-47 B3KL97.1 B3KL97_9BACI Putative uncharacterized protein 182 3e-44 Q5KXT3.1 Q5KXT3_GEOKA Hypothetical conserved protein 131 7e-29 C3IYS8.1 C3IYS8_9BACI Putative uncharacterized protein 131 7e-29 B7Y7R9.1 B7Y7R9_9BACI Putative uncharacterized protein 131 7e-29 >B1DMC7.1 B1DMC7_9BACL Putative uncharacterized protein Length = 254 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 96/213 (45%), Positives = 136/213 (63%), Gaps = 2/213 (0%) Query: 36 SGCMYPGKD-QQTGSSYRESVKRVQEAVDDYQQQEGLLPILNADEATPRYEKFVIDLGKL 94 SGCMYP + +Q ++ +E+V+ VQ A+D YQ + G+LP+ N+ TP YEKF +D +L Sbjct: 30 SGCMYPKSELKQNQAAPKEAVRNVQAAIDQYQSETGMLPMKNSSGDTPVYEKFQVDFTQL 89 Query: 95 HEMGYLDEIPAAAFEKGGSAYFLILDEETRPSVRLMDIVTVQKVNDVQRQINRYKSGHGG 154 GYL IP AAFE GG+ YFLI++EET+P ++LM++VT Q++ND+Q +N YK H Sbjct: 90 KNKGYLSSIPTAAFENGGNYYFLIINEETKPQIKLMNLVTYQQINDIQSWVNDYKKNHDN 149 Query: 155 KLPAGDEIYPGLFTIDARQAGTGSITLKSIFSGQPLQFIMDKNGTVYADYGPDIRSAIDK 214 +LP G+ YPG ID + L S ++ Q L IMD++G VY DYG DI A+ K Sbjct: 150 QLPKGEPAYPGYSYIDYKAVNKKEPELHSDYTFQTLAAIMDESGRVYTDYGIDIMQAMQK 209 Query: 215 NGVSP-EANRDLRLQLEQASYYVPVKSLPYYWV 246 G + A+ DLR L + +VPVK+ Y+WV Sbjct: 210 KGETDIAADTDLRTVLVDSGMFVPVKAPVYHWV 242 >B3KL97.1 B3KL97_9BACI Putative uncharacterized protein Length = 166 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 110/155 (70%) Query: 91 LGKLHEMGYLDEIPAAAFEKGGSAYFLILDEETRPSVRLMDIVTVQKVNDVQRQINRYKS 150 + +L GY+D+IP AFEKGGS YFLI++EET P+V++MD+ T QKVNDVQR +N YK Sbjct: 1 MDQLKGRGYIDQIPDTAFEKGGSGYFLIINEETEPTVKVMDLTTAQKVNDVQRAVNLYKM 60 Query: 151 GHGGKLPAGDEIYPGLFTIDARQAGTGSITLKSIFSGQPLQFIMDKNGTVYADYGPDIRS 210 + LPAG+ +YPG +D + S+ L S++SGQ + F+MD+ GTVYADY DI Sbjct: 61 ANDNALPAGEALYPGYTAVDLSKTEAKSLKLMSVYSGQEMPFMMDEEGTVYADYAFDIMQ 120 Query: 211 AIDKNGVSPEANRDLRLQLEQASYYVPVKSLPYYW 245 AI KNG P+ DLR+ LE+ SYYVPVKS+PY W Sbjct: 121 AIQKNGSEPKEGEDLRVFLEKESYYVPVKSVPYAW 155 >Q5KXT3.1 Q5KXT3_GEOKA Hypothetical conserved protein Length = 240 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 5/211 (2%) Query: 36 SGCMYPG-KDQQTGSSYRESVKRVQEAVDDYQQQEG-LLPILNADEATPRYEKFVIDLGK 93 SGC+YP + +Q Y++ V VQ AVD+Y++ G LLPI D TP Y K+ +D K Sbjct: 18 SGCLYPQERLKQNQIPYKDQVAAVQSAVDEYRKATGGLLPIKTRDMNTPMYLKYPVDFQK 77 Query: 94 LHEMGYLDEIPAAAFEKGGSAYFLILDEETRPSVRLMDIVTVQKVNDVQRQINRYKSGHG 153 L Y+ E P A+E GG ++I+D ET P+V+L+D+ +++ D++ +++ Y H Sbjct: 78 LVPR-YMQEPPGNAYESGGVFQYMIIDAETNPTVKLLDLRLAERIRDLKLRLSMYTDKHK 136 Query: 154 GKLPAGDEIYPGLFTIDARQAGTGSIT-LKSIFSGQPLQFIMDKNGTVYADYGPDIRSAI 212 P D + PG+FT+D ++ G + S FSG L F++D NG +Y DY D+ +A+ Sbjct: 137 YP-PFQDVVAPGVFTLDYKKLGYKEPPYVVSPFSGNNLPFVIDGNGEIYIDYRSDLYAAL 195 Query: 213 DKNGVSPEANRDLRLQLEQASYYVPVKSLPY 243 K + D+R L S +VP SLPY Sbjct: 196 KKYPHHYKPGDDIRPILTDHSLFVPAYSLPY 226 >C3IYS8.1 C3IYS8_9BACI Putative uncharacterized protein Length = 240 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 5/211 (2%) Query: 36 SGCMYPG-KDQQTGSSYRESVKRVQEAVDDYQQQEG-LLPILNADEATPRYEKFVIDLGK 93 SGC+YP + +Q Y++ V VQ AVD+Y++ G LLPI D TP Y K+ +D K Sbjct: 18 SGCLYPQERLKQNQIPYKDQVAAVQSAVDEYRKATGGLLPIKTRDMNTPMYLKYPVDFQK 77 Query: 94 LHEMGYLDEIPAAAFEKGGSAYFLILDEETRPSVRLMDIVTVQKVNDVQRQINRYKSGHG 153 L Y+ E P A+E GG ++I+D ET P+V+L+D+ +++ D++ +++ Y H Sbjct: 78 LVPR-YMQEPPGNAYESGGVFQYMIIDAETNPTVKLLDLRLAERIRDLKLRLSMYTDKHK 136 Query: 154 GKLPAGDEIYPGLFTIDARQAGTGSIT-LKSIFSGQPLQFIMDKNGTVYADYGPDIRSAI 212 P D + PG+FT+D ++ G + S FSG L F++D NG +Y DY D+ +A+ Sbjct: 137 YP-PFQDVVAPGVFTLDYKKLGYKEPPYVVSPFSGNNLPFVIDGNGEIYIDYRSDLYAAL 195 Query: 213 DKNGVSPEANRDLRLQLEQASYYVPVKSLPY 243 K + D+R L S +VP SLPY Sbjct: 196 KKYPHHYKPGDDIRPILTDHSLFVPAYSLPY 226 >B7Y7R9.1 B7Y7R9_9BACI Putative uncharacterized protein Length = 240 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 5/211 (2%) Query: 36 SGCMYPG-KDQQTGSSYRESVKRVQEAVDDYQQQEG-LLPILNADEATPRYEKFVIDLGK 93 SGC+YP + +Q Y++ V VQ AVD+Y++ G LLPI D TP Y K+ +D K Sbjct: 18 SGCLYPQERLKQNQIPYKDQVAAVQSAVDEYRKATGGLLPIKTRDMNTPMYLKYPVDFQK 77 Query: 94 LHEMGYLDEIPAAAFEKGGSAYFLILDEETRPSVRLMDIVTVQKVNDVQRQINRYKSGHG 153 L Y+ E P A+E GG ++I+D ET P+V+L+D+ +++ D++ +++ Y H Sbjct: 78 LVPR-YMQEPPGNAYESGGVFQYMIIDAETNPTVKLLDLRLAERIRDLKLRLSMYTDKHK 136 Query: 154 GKLPAGDEIYPGLFTIDARQAGTGSIT-LKSIFSGQPLQFIMDKNGTVYADYGPDIRSAI 212 P D + PG+FT+D ++ G + S FSG L F++D NG +Y DY D+ +A+ Sbjct: 137 YP-PFQDVVAPGVFTLDYKKLGYKEPPYVVSPFSGNNLPFVIDGNGEIYIDYRSDLYAAL 195 Query: 213 DKNGVSPEANRDLRLQLEQASYYVPVKSLPY 243 K + D+R L S +VP SLPY Sbjct: 196 KKYPHHYKPGDDIRPILTDHSLFVPAYSLPY 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,482,263,024 Number of extensions: 61875903 Number of successful extensions: 139492 Number of sequences better than 1.0e-05: 101 Number of HSP's gapped: 139267 Number of HSP's successfully gapped: 101 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)