BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0044.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLR1.1 B3KLR1_9BACI Putative uncharacterized protein 234 5e-60 B1DMB9.1 B1DMB9_9BACL Putative uncharacterized protein 184 8e-45 C0ZCD0.1 C0ZCD0_BREBN Heptaprenyl diphosphate synthase component... 86 4e-15 Q8CXF7.1 Q8CXF7_OCEIH Heptaprenyl diphosphate synthase component... 70 2e-10 B4BKZ9.1 B4BKZ9_9BACI Trans-hexaprenyltranstransferase EC=2.5.1.30 69 4e-10 >B3KLR1.1 B3KLR1_9BACI Putative uncharacterized protein Length = 286 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 117/211 (55%), Positives = 148/211 (70%) Query: 7 MKPYRIPQLAKPYTDYDMIQRHTELPPFSEGRGHLLYIFLSHGSPAGIKGGELYTLVTGL 66 MKPYR+P+LA+ Y +YDMIQ HTELP F + R HLLYIFL ELY LVT L Sbjct: 1 MKPYRVPELAEKYINYDMIQNHTELPGFPDARVHLLYIFLMDSGRNIAGHEELYALVTSL 60 Query: 67 VQLGLDTHECIDRVQDEPGRDPMRSRQLKVLAGDYFSSWFYHLLAKREQIEMVGILSTAI 126 VQ+GLDTHE ID + G MRSRQLKVLAGDYFSS FY LLA + +I ++ +LS A+ Sbjct: 61 VQVGLDTHESIDVTEGNQGEAMMRSRQLKVLAGDYFSSRFYQLLALKGEIAVISLLSKAV 120 Query: 127 ADLNVMKAHLYSKMKGMFLSAEQYLRHTVQLNMRLFLSFTPMIEESLAELWEKLLAEFSQ 186 +++NVMK LY KMK L +E+YL+ TVQLNM+LFLSFTP++E S+ E WEKLL E ++ Sbjct: 121 SEVNVMKMRLYGKMKKNLLPSEEYLQLTVQLNMQLFLSFTPLLEVSVQETWEKLLKEITE 180 Query: 187 YETVLLELRRGGDPVNAMEGYCYWKVLESAT 217 ET++ E+ R P GY YW ++ES + Sbjct: 181 CETLVQEMERCATPDIGRCGYAYWHLIESGS 211 >B1DMB9.1 B1DMB9_9BACL Putative uncharacterized protein Length = 283 Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 96/211 (45%), Positives = 132/211 (62%), Gaps = 1/211 (0%) Query: 7 MKPYRIPQLAKPYTDYDMIQRHTELPPFSEGRGHLLYIFLSHGSPAGIKGGELYTLVTGL 66 MKPYRI +LA Y +YDMIQ +TELP F + R LL+ LS + ELY+LV L Sbjct: 1 MKPYRINELASKYVEYDMIQTYTELPAFPDPRLRLLHAVLSEHETLEPRS-ELYSLVVSL 59 Query: 67 VQLGLDTHECIDRVQDEPGRDPMRSRQLKVLAGDYFSSWFYHLLAKREQIEMVGILSTAI 126 VQLG+DTH+ ID + + MRSRQLKVLAGDYFSS FY LL++ QI MV +S A+ Sbjct: 60 VQLGMDTHDLIDTEETRRSENEMRSRQLKVLAGDYFSSRFYQLLSQAGQISMVSKISAAV 119 Query: 127 ADLNVMKAHLYSKMKGMFLSAEQYLRHTVQLNMRLFLSFTPMIEESLAELWEKLLAEFSQ 186 ++N +K LY+KM+ L AE+YL +L +F F+ M+E + +LW ++L + S+ Sbjct: 120 CEVNRLKMDLYTKMQQSQLKAEEYLNKLTELKSEMFQLFSGMMEGAFVKLWPEMLEDVSR 179 Query: 187 YETVLLELRRGGDPVNAMEGYCYWKVLESAT 217 ETVL E+ R P + + YW V++ T Sbjct: 180 CETVLDEMNRFDSPSRFYQSWAYWHVMQEGT 210 >C0ZCD0.1 C0ZCD0_BREBN Heptaprenyl diphosphate synthase component I EC=2.5.1.30 Length = 277 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 17/201 (8%) Query: 1 MAPEAEMKPYRIPQLAKPYTDYDMIQRHTELPPFSEGRGHLLYIFLSHGSPAGIKGGELY 60 ++P E++ I Q+ K T + ++ + ++P +E R LLY+FL K L Sbjct: 5 LSPNVEVRSI-IEQIYKRIT-HSYVEHYVDVPSMAENRLELLYLFLLEQGMPKEKASVLC 62 Query: 61 TLVTGLVQLGLDTHECIDRVQDEPGRDPMRSRQLKVLAGDYFSSWFYHLLAKREQIEMVG 120 T TGLVQLGLDTHE + D + R+RQL VLAGDY+SS +YHLLA +I+ + Sbjct: 63 T-ATGLVQLGLDTHELVKNEYD-SSQSAERNRQLTVLAGDYYSSRYYHLLASAGEIQAIQ 120 Query: 121 ILSTAIADLNVMKAHLY-SKMKGMFLSAEQY--LRHTVQLNMRLFLSFTPMIEE-----S 172 +LS AI +N K LY + LS E+Y LR+T+ + + ++EE Sbjct: 121 VLSAAIQRVNEAKMRLYIAGRDSKTLSDEEYWELRNTIDTGL-----YVAVVEEYADSAD 175 Query: 173 LAELWEKLLAEFSQYETVLLE 193 W L+ + ++ E+V+ E Sbjct: 176 RRRFWSDLMKQTAKVESVIGE 196 >Q8CXF7.1 Q8CXF7_OCEIH Heptaprenyl diphosphate synthase component I (Spore germination protein C1) EC=2.5.1.30 Length = 238 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 22 YDMIQRHTELPPFSEGRGHLLYIFLSHGSPAGIKGGELYTLVTGLVQLGLDTHECIDRVQ 81 Y I +H + P E + LL + E Y + T LVQ+ LDTH+ + + Sbjct: 21 YGYIHKHIQQPLIDEAKWGLLQFLVEQDRSLTPMQRERYIITTMLVQIALDTHDLVPIKK 80 Query: 82 DEPGRDPMRSRQLKVLAGDYFSSWFYHLLAKREQIEMVGILSTAIADLNVMKAHLYSKMK 141 S+QL+VL+GDY+S +Y LL++ +IE + L+ AI ++N +K LY K Sbjct: 81 VAETEQETLSKQLQVLSGDYYSGLYYFLLSEVGEIEFIQTLANAIREINELKMALYYKDS 140 Query: 142 GMFLSAEQYLRHTVQLNMRLFLSFTPMIEESLA 174 F + + T ++N L + T + + A Sbjct: 141 PTF---HERINLTKKINSMLIIHVTQFLYDDTA 170 >B4BKZ9.1 B4BKZ9_9BACI Trans-hexaprenyltranstransferase EC=2.5.1.30 Length = 266 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 21 DYDMIQRHTELPPFSEGRGHLLYIFLSHGSPAGIKGGELYTLVTGLVQLGLDTHECIDRV 80 ++ ++ H P E R LL + + +PA + Y + LVQ+ LDTH D V Sbjct: 23 NHSYLREHVPAPAVDEDR-LLLALSMFADAPAAPNESDRYIIAMMLVQIALDTH---DEV 78 Query: 81 QDEPGRDPMRSRQLKVLAGDYFSSWFYHLLAKREQIEMVGILSTAIADLNVMKAHLYSK 139 D D +++RQL VLAGD +S +Y LLA+ I ++ + + AI D+N K LY K Sbjct: 79 TDSG--DDLKTRQLIVLAGDLYSGLYYELLARSGDIALIRLFAEAIRDINEQKVRLYEK 135 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,483,706,428 Number of extensions: 55715711 Number of successful extensions: 118076 Number of sequences better than 1.0e-05: 103 Number of HSP's gapped: 118051 Number of HSP's successfully gapped: 103 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)