BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0042.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLR3.1 B3KLR3_9BACI 4-hydroxybenzoate polyprenyltransferase 362 2e-98 C0ZCD2.1 C0ZCD2_BREBN Probable 4-hydroxybenzoate octaprenyltrans... 321 6e-86 B1DMB7.1 B1DMB7_9BACL 4-hydroxybenzoate polyprenyltransferase 314 7e-84 Q5WGT3.1 Q5WGT3_BACSK 4-hydroxybenzoate octaprenyltransferase EC... 294 7e-78 P94299.1 P94299_BACFI 4-hydroxybenzoate octaprenyltransferase 285 3e-75 >B3KLR3.1 B3KLR3_9BACI 4-hydroxybenzoate polyprenyltransferase Length = 290 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/289 (61%), Positives = 217/289 (75%) Query: 1 MLKKIGIFLQMIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAM 60 M KKIG +L+MIK EHT+FALPFAFMGA+LGS V+F LPSWG IGWI +AMFGARSAA Sbjct: 1 MFKKIGTYLEMIKVEHTLFALPFAFMGAILGSAVVFDRLPSWGDIGWIFLAMFGARSAAF 60 Query: 61 GLNRLIDRFSDAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPI 120 GLNRL D+ DAKNPRTA RAIPAGLLK EV L+P + +LLPI Sbjct: 61 GLNRLTDQHIDAKNPRTANRAIPAGLLKPLEVIIFIILSFAVFFWATYMLDPFAFRLLPI 120 Query: 121 AVFLLVFYSFTKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFD 180 A+F+L+ YSFTKRFTW CHL+LGLT ALAPL +MVFY + FWT GFD Sbjct: 121 AIFMLIIYSFTKRFTWLCHLVLGLTTALAPLGGWVAVTGQIDWKAMVFYIALAFWTGGFD 180 Query: 181 IIYSCQDVEFDKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGM 240 I+Y+CQD +FD KE LYSIP RFG+ +AL A+ FH++T +GF+ L F+T + WWY+AGM Sbjct: 181 IVYACQDEKFDAKERLYSIPSRFGLHKALWFARGFHVVTAVGFIVLFFVTPVGWWYLAGM 240 Query: 241 LIAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLVVQF 289 +IA ILFY+H+I+SP+D+SRLQTAFFTMN LSI++F FTLIDLVV++ Sbjct: 241 VIACGILFYQHYILSPNDMSRLQTAFFTMNSTLSIILFVFTLIDLVVRY 289 >C0ZCD2.1 C0ZCD2_BREBN Probable 4-hydroxybenzoate octaprenyltransferase EC=2.5.1.- Length = 278 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 153/277 (55%), Positives = 202/277 (72%) Query: 11 MIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAMGLNRLIDRFS 70 MIKFEH++FALPFAFMGA+LGS+V+ A P+W +I W+ VAM GARSAAM LNR+IDR Sbjct: 1 MIKFEHSLFALPFAFMGAVLGSIVVEHAWPTWSEIFWVTVAMVGARSAAMSLNRVIDRLI 60 Query: 71 DAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPIAVFLLVFYSF 130 DAKNPRT RAIPAGL+ + EV +LN L+ KLLP+AVF+LV YS+ Sbjct: 61 DAKNPRTVTRAIPAGLISIVEVILFIVVSFAVLFIAAFQLNDLAVKLLPLAVFVLVLYSY 120 Query: 131 TKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFDIIYSCQDVEF 190 TKRFTW CH +LG+ I PL ++ + +++FWTAGFDIIY+CQD +F Sbjct: 121 TKRFTWLCHFVLGVAIGFGPLGGWVATTGQVDGIGLLLFASVMFWTAGFDIIYACQDADF 180 Query: 191 DKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGMLIAYIILFYE 250 D+KEGL+S+P RFG+A AL IA++ H+LT +G +SL + DLS W++ G+LI+ IL YE Sbjct: 181 DRKEGLFSMPSRFGIANALLIARICHVLTFVGLMSLYVVADLSIWFLVGVLISGAILIYE 240 Query: 251 HHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLVV 287 H +V P+DLS+L AFF MNG+LS+V+F+FT+IDLV+ Sbjct: 241 HTLVKPTDLSKLDMAFFNMNGILSVVMFTFTMIDLVI 277 >B1DMB7.1 B1DMB7_9BACL 4-hydroxybenzoate polyprenyltransferase Length = 291 Score = 314 bits (804), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 153/287 (53%), Positives = 203/287 (70%) Query: 1 MLKKIGIFLQMIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAM 60 M++K+ I L+MIKFEH+VFALPFAFMGA+LG++ + LPSWG+IGWI +AM GARSAAM Sbjct: 1 MIRKLRIILEMIKFEHSVFALPFAFMGAVLGTLAVEKRLPSWGEIGWIALAMVGARSAAM 60 Query: 61 GLNRLIDRFSDAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPI 120 LNR+ID+ D NPRTA RA+PAGLLK EV L+P++ KL+PI Sbjct: 61 SLNRVIDKAIDKANPRTAQRALPAGLLKSIEVILFIIVSFALLFIAAANLDPIAMKLMPI 120 Query: 121 AVFLLVFYSFTKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFD 180 AV +LV YS+ KR TW CH+ LGLTI L+PL + V YFT+ W AGFD Sbjct: 121 AVVMLVLYSYMKRITWLCHVFLGLTIGLSPLGGWVAVTGSLNASAWVLYFTVALWIAGFD 180 Query: 181 IIYSCQDVEFDKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGM 240 I+Y+ QD E+D+ GL+SIP RFG+ AL IA+ FH++T IGF +L ++T+LSW Y+ G Sbjct: 181 IVYATQDYEYDRDNGLHSIPARFGLRGALWIARGFHVVTAIGFFALFWMTELSWVYLIGT 240 Query: 241 LIAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLVV 287 + + ++LFY+H +V P+DLSR+Q AFF MNG LS+V+F F + DL+V Sbjct: 241 IASILMLFYQHWLVRPNDLSRVQIAFFGMNGTLSVVLFVFAMFDLLV 287 >Q5WGT3.1 Q5WGT3_BACSK 4-hydroxybenzoate octaprenyltransferase EC=2.5.1.- Length = 295 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 151/290 (52%), Positives = 195/290 (67%), Gaps = 1/290 (0%) Query: 2 LKKIGIFLQMIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAMG 61 L K IFL+MIKFEHT+FALPFAF+ LLGS++ +G PS Q W+ +AM GARSAAM Sbjct: 6 LNKTKIFLRMIKFEHTIFALPFAFLAMLLGSLIAYGQFPSLLQWLWVTLAMVGARSAAMS 65 Query: 62 LNRLIDRFSDAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPIA 121 LNR+ID D +NPRTA R IPAGLL +V +LN LS LLPIA Sbjct: 66 LNRVIDAKFDRENPRTANREIPAGLLSKADVWIFIVASFALLFLAASQLNILSVYLLPIA 125 Query: 122 VFLLVFYSFTKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFDI 181 VF LVFYS+TKRFTWACHLILG+TI +APL S + ++FW AGFD Sbjct: 126 VFFLVFYSYTKRFTWACHLILGITIGIAPLGGWVAVTGQLPLASFCLFLAVMFWLAGFDT 185 Query: 182 IYSCQDVEFDKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGML 241 +Y+ QD E+D+ GL+SIP RFG+ +AL IA+ FH+++ FV L F+T L+W Y+ G+ Sbjct: 186 VYATQDAEYDQTHGLHSIPSRFGIKKALWIARCFHVVSFAFFVGLYFLTPLTWIYLVGVA 245 Query: 242 IAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLID-LVVQFY 290 ++ +I+ Y+H IVS DLS++Q AFF MNG LS+V+F F D LV++FY Sbjct: 246 LSGMIMVYQHLIVSEKDLSKVQLAFFPMNGTLSVVMFLFAFADMLVIRFY 295 >P94299.1 P94299_BACFI 4-hydroxybenzoate octaprenyltransferase Length = 277 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/275 (53%), Positives = 187/275 (68%) Query: 11 MIKFEHTVFALPFAFMGALLGSVVMFGALPSWGQIGWIVVAMFGARSAAMGLNRLIDRFS 70 MIKFEHTVFALPFA+ GA+LGS ++ P+ Q WI VAM GARSAAM LNR+ID Sbjct: 1 MIKFEHTVFALPFAYFGAMLGSFIVNETWPTLMQWVWITVAMVGARSAAMSLNRVIDEKI 60 Query: 71 DAKNPRTAGRAIPAGLLKVGEVSXXXXXXXXXXXXXXXKLNPLSAKLLPIAVFLLVFYSF 130 D NPRTA RAIPAGL+ EV +LN L+ LLP+AVF LV YS+ Sbjct: 61 DKYNPRTADRAIPAGLISKIEVMFFIIISFAMLIYAAFQLNQLAVYLLPLAVFFLVIYSY 120 Query: 131 TKRFTWACHLILGLTIALAPLXXXXXXXXXXXXXSMVFYFTIVFWTAGFDIIYSCQDVEF 190 TKRFTWACHLILG+TIALAPL + V + + WT GFD+IY+ QD ++ Sbjct: 121 TKRFTWACHLILGITIALAPLGGWVAVTGSVSFEAFVLFTAVALWTTGFDVIYATQDADY 180 Query: 191 DKKEGLYSIPVRFGVARALTIAKVFHMLTGIGFVSLLFITDLSWWYVAGMLIAYIILFYE 250 D++ GLYSIP RFG+ +AL +AK+FH+++ F L IT LSW Y+ G++IA +I+ YE Sbjct: 181 DRERGLYSIPSRFGIRKALILAKLFHVISFAAFFLLFLITPLSWLYLIGVIIAGLIMIYE 240 Query: 251 HHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDL 285 H +VS DLS++ AFFTMNG+LS+V+F FT+ D+ Sbjct: 241 HSLVSADDLSKVGVAFFTMNGILSLVMFIFTVGDV 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.145 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,462,765,640 Number of extensions: 53109068 Number of successful extensions: 234688 Number of sequences better than 1.0e-05: 700 Number of HSP's gapped: 233823 Number of HSP's successfully gapped: 700 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 130 (54.7 bits)