BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0040.p (286 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DMB5.1 B1DMB5_9BACL Putative uncharacterized protein 251 5e-65 C0ZCD4.1 C0ZCD4_BREBN Putative menaquinone biosynthesis protein 209 3e-52 P94301.1 P94301_BACFI Putative uncharacterized protein 202 4e-50 Q9KCC1.1 Q9KCC1_BACHD BH1652 protein 201 9e-50 A4J6K6.1 A4J6K6_DESRM Putative uncharacterized protein 183 1e-44 >B1DMB5.1 B1DMB5_9BACL Putative uncharacterized protein Length = 286 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 127/276 (46%), Positives = 164/276 (59%) Query: 6 PTVIGKISYTNSWPVFHNFHTSSLSFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAA 65 P +G+I Y N+WP+FH + ++V +VPA LN+ + G I V A+SSFAY Sbjct: 8 PLRVGRIDYANAWPLFHYLEDYTEQAGIDIVLKVPAELNRLLREGEIQVSAVSSFAYGMN 67 Query: 66 XXXXXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNG 125 +G V SIL+F + P+ Q + IAVT TSATSVNLLKILM K Sbjct: 68 DKDYVLLPHLSVGSEGKVNSILLFLKQPIEQSSPERIAVTTTSATSVNLLKILMKKYYEL 127 Query: 126 KPEYISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVTDLGGLWKEWTGFGMTFAVW 185 P Y SA PDLD+M+ AD LLIGD AIR SW+++G V DLG +W +WTG MT+AV Sbjct: 128 DPAYESAEPDLDRMLEWADGALLIGDPAIRESWENKGLTVIDLGEVWNQWTGLAMTYAVV 187 Query: 186 AVNREAARMRPEAVAEIADAFVESKRRGRQNLAPIIREACSAIGGSAAYWDTYFRNLCYD 245 A +EA PEA + AF SK + +L P+I++A +GG YW YF L YD Sbjct: 188 AARKEAVEQSPEAFERLFQAFTASKEKSVGDLKPLIQKAMEQLGGDPDYWQMYFTCLNYD 247 Query: 246 FGERQQEGLNLYFRYAYELGLLQREVKMEMWSQNLL 281 FG +QQEGL LYFRYA ELGLL +V + + + L Sbjct: 248 FGPKQQEGLTLYFRYASELGLLDHDVNLHFYKEESL 283 >C0ZCD4.1 C0ZCD4_BREBN Putative menaquinone biosynthesis protein Length = 287 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/268 (39%), Positives = 153/268 (57%) Query: 9 IGKISYTNSWPVFHNFHTSSLSFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAXXX 68 +G+I YTN PV+ F + E + +VPA LN M G I +G +SSF+YA Sbjct: 7 VGQILYTNVLPVYFYFDQAKFEDRIEFIRQVPAQLNTAMAKGEIDLGPISSFSYAEHASE 66 Query: 69 XXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGKPE 128 G V S+ +FS+ P+ QV IA+TNTSAT+VNLLKI++ K + Sbjct: 67 YVALADLSVSAKGRVGSLFLFSKKPIEQVNGAKIALTNTSATTVNLLKIILHKFYEYEIS 126 Query: 129 YISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVTDLGGLWKEWTGFGMTFAVWAVN 188 Y++ P L +M+ ADA LLIGD AI A + V DLG LW ++TG+ MTFA+WA+ Sbjct: 127 YVTQEPILHEMLEDADAALLIGDDAITAERTAKDLHVYDLGELWHQFTGYSMTFAIWALR 186 Query: 189 REAARMRPEAVAEIADAFVESKRRGRQNLAPIIREACSAIGGSAAYWDTYFRNLCYDFGE 248 R + +A++ +F+ESKR+ R N AP+I + GG W YF+ L ++FG+ Sbjct: 187 RAVIADHHDLIADVHASFLESKRKTRANTAPLIDYVHTHFGGEKEQWIHYFQGLQHEFGD 246 Query: 249 RQQEGLNLYFRYAYELGLLQREVKMEMW 276 Q+ GL Y+R A ELGLL +++W Sbjct: 247 VQRIGLEYYYRCAAELGLLSAPATVDLW 274 >P94301.1 P94301_BACFI Putative uncharacterized protein Length = 281 Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 162/273 (59%), Gaps = 4/273 (1%) Query: 8 VIGKISYTNSWPVFHNFHTSSL-SFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAX 66 VIG+ISYTN P++++ L S ++ +VP+ LN+ M++G + VG +SSFAYA Sbjct: 4 VIGEISYTNILPLYYDLDREYLESQGCKIKPQVPSELNREMSAGRVDVGGISSFAYAENK 63 Query: 67 XXXXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGK 126 G V SI +FS+VP+ Q+++ +A+T+TSATS +LLKI++ + Sbjct: 64 NHFTLFPNLSVSALGKVGSIFLFSKVPIHQLSAKKVALTSTSATSTHLLKIILERFYEQS 123 Query: 127 PEYISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVT-DLGGLWKEWTGFGMTFAVW 185 P Y + P++ +M++ DACLLIGD AI AS+ + + DLG LW + TG MTFAV Sbjct: 124 PRYTTMKPNIHKMLSDHDACLLIGDEAIVASFNKREELYQYDLGELWYKHTGMPMTFAVL 183 Query: 186 AVNREAARMRPEAVAEIADAFVESKRRGR-QNLAPIIREACSAIGGSAAYWDTYFRNLCY 244 A+ EA + +F+ESK+R + P+I++ GG ++W+ YF NL Y Sbjct: 184 AIRNEAIDHNSHLAGTLYRSFLESKKRSEMSHYQPMIKDILKTYGGDKSFWEDYFNNLIY 243 Query: 245 DFGERQQEGLNLYFRYAYELGLLQREVK-MEMW 276 DF R+Q GL LY++ AY+LG L V+ + +W Sbjct: 244 DFSNREQRGLMLYYQLAYDLGYLSEPVESIHVW 276 >Q9KCC1.1 Q9KCC1_BACHD BH1652 protein Length = 287 Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 108/272 (39%), Positives = 159/272 (58%), Gaps = 4/272 (1%) Query: 9 IGKISYTNSWPVFHNFHTSSL-SFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAXX 67 +G+I YTN++P F+ + L + + PA LN+ M +G I VG +SSFAYA Sbjct: 5 VGEIKYTNAFPFFYYVDRNKLLEKDCHFLIQTPATLNREMKAGRIQVGPISSFAYAENVD 64 Query: 68 XXXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGKP 127 +GPV SI ++++ PL ++ IA+T TSATSV+LLKIL+ + + Sbjct: 65 EFVLMPNLSVSANGPVGSIFLYTKRPLEELEGSRIALTTTSATSVHLLKILLKQYVGVNV 124 Query: 128 EYISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVT-DLGGLWKEWTGFGMTFAVWA 186 Y P D+MM D CLLIGD AI SW+++ DLG LWKE+TG MTFAV+A Sbjct: 125 TYDEMDPSFDEMMQDHDGCLLIGDEAIVTSWREEVETYRYDLGELWKEYTGTSMTFAVFA 184 Query: 187 VNREAARMRPEAVAEIADAFVESKRRGR-QNLAPIIREACSAIGGSAAYWDTYFRNLCYD 245 V ++A + + E+ AFV SK + R + A +I +GG+ A+W+ YF NL YD Sbjct: 185 VRKDAIARQRAILEELYTAFVLSKEKNRKEQYASMIGHIQKGMGGTTAFWNHYFSNLVYD 244 Query: 246 FGERQQEGLNLYFRYAYELGLLQREVK-MEMW 276 F +QQ+GL L++ AYE G L + ++ +++W Sbjct: 245 FHTQQQKGLLLFYEKAYEEGFLPKPIESIKIW 276 >A4J6K6.1 A4J6K6_DESRM Putative uncharacterized protein Length = 284 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 145/273 (53%), Gaps = 4/273 (1%) Query: 10 GKISYTNSWPVFHNFHTSSLSFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAXXXX 69 G++ Y N+ PVFH L F E++ P +LN+ + V ++SS YA Sbjct: 7 GQVDYLNTLPVFHALEDGLLPFDGELIKGPPTMLNKMFMEDQLEVASISSVEYARNIDKC 66 Query: 70 XXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGKPEY 129 DGPV+SIL+FSR P+ ++ I +T++SATSV LLK+L + + EY Sbjct: 67 IILPNLSVSADGPVQSILLFSRAPIVELEGRKICLTSSSATSVALLKVLFQHYYHLEVEY 126 Query: 130 ISAAPDLDQMMAGADACLLIGDHAIRA----SWQDQGYIVTDLGGLWKEWTGFGMTFAVW 185 ++ PDLD MMA D LLIGD A+RA + Y VTDLG WK++TG M +A+W Sbjct: 127 VTQKPDLDSMMAEGDGALLIGDDAMRAHLRVKQEKLAYHVTDLGEAWKQFTGERMVYALW 186 Query: 186 AVNREAARMRPEAVAEIADAFVESKRRGRQNLAPIIREACSAIGGSAAYWDTYFRNLCYD 245 + +E A+ PE V + VE+K+ Q+L+ ++ + G + YF + Sbjct: 187 VIRKEFAKENPEVVNNLCHQLVEAKKLADQSLSAVLEKGRRRSGLPMEILEEYFNTINNA 246 Query: 246 FGERQQEGLNLYFRYAYELGLLQREVKMEMWSQ 278 F E + L ++ Y Y+ GL++ V++ +W + Sbjct: 247 FAEDHRRALLTFYDYCYKSGLIEERVRLAIWGE 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.132 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,599,853,253 Number of extensions: 60335852 Number of successful extensions: 173996 Number of sequences better than 1.0e-05: 101 Number of HSP's gapped: 173810 Number of HSP's successfully gapped: 101 Length of query: 286 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 152 Effective length of database: 1,798,280,193 Effective search space: 273338589336 Effective search space used: 273338589336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)