BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0038.p (152 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLR6.1 B3KLR6_9BACI Nucleoside diphosphate kinase EC=2.7.4.6 234 2e-60 B1DMH2.1 B1DMH2_9BACL Nucleoside diphosphate kinase EC=2.7.4.6 211 1e-53 Q4EN84.1 Q4EN84_LISMO Nucleoside diphosphate kinase EC=2.7.4.6 199 8e-50 Q8Y5X4.1 NDK_LISMO Nucleoside diphosphate kinase EC=2.7.4.6 199 8e-50 C1KWM9.1 C1KWM9_LISMC Putative nucleoside diphosphate kinase 197 2e-49 >B3KLR6.1 B3KLR6_9BACI Nucleoside diphosphate kinase EC=2.7.4.6 Length = 150 Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 111/147 (75%), Positives = 127/147 (86%) Query: 6 MEQTYLMIKPDGVQRGLIGRIVARLEDKGFKLVAAKLIIITEEQAKKHYAEHEGKDFFPE 65 ME+T+LMIKPDGVQRGLIGRIV RLEDKGFKLVA K + I++E AK+HYAEHEGKDFF Sbjct: 4 MERTFLMIKPDGVQRGLIGRIVGRLEDKGFKLVAGKFMQISDELAKRHYAEHEGKDFFDN 63 Query: 66 LVRFITSGPVFAMVWEGDDVIALSRLMIGKTKVGEALPGTIRGDYASHTPLNLIHGSDSP 125 LV FITSGPVFAMVWEGDD+IALSR +IGKT V +ALPGTIRGD+++HTP NLIHGSDSP Sbjct: 64 LVGFITSGPVFAMVWEGDDIIALSRQVIGKTNVKDALPGTIRGDFSAHTPHNLIHGSDSP 123 Query: 126 ESAAREIANFFAPDEPADYNKDIAAWM 152 ESA REIANFF E +YNK ++ W+ Sbjct: 124 ESAQREIANFFDDRELVEYNKTLSPWL 150 >B1DMH2.1 B1DMH2_9BACL Nucleoside diphosphate kinase EC=2.7.4.6 Length = 147 Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 98/147 (66%), Positives = 119/147 (80%) Query: 6 MEQTYLMIKPDGVQRGLIGRIVARLEDKGFKLVAAKLIIITEEQAKKHYAEHEGKDFFPE 65 ME+T+LMIKPDGVQRGLIG IV+R E KG KLVAAK + I+ E A+ HYAEH GK F+ Sbjct: 1 MERTFLMIKPDGVQRGLIGEIVSRFERKGLKLVAAKFMAISRELAETHYAEHHGKPFYEP 60 Query: 66 LVRFITSGPVFAMVWEGDDVIALSRLMIGKTKVGEALPGTIRGDYASHTPLNLIHGSDSP 125 L+ F+T+GPVFAMVW+GD+VIAL+R MIGKT +ALPGTIR D+A HT LNLIHGSDSP Sbjct: 61 LLNFVTAGPVFAMVWQGDNVIALTRAMIGKTDAVDALPGTIRSDFAVHTNLNLIHGSDSP 120 Query: 126 ESAAREIANFFAPDEPADYNKDIAAWM 152 ESAAREIANFF+P++ +Y + W+ Sbjct: 121 ESAAREIANFFSPEQLVEYEHTVQRWI 147 >Q4EN84.1 Q4EN84_LISMO Nucleoside diphosphate kinase EC=2.7.4.6 Length = 147 Score = 199 bits (505), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 98/147 (66%), Positives = 112/147 (76%) Query: 6 MEQTYLMIKPDGVQRGLIGRIVARLEDKGFKLVAAKLIIITEEQAKKHYAEHEGKDFFPE 65 MEQTY+M+KPDGV+RGLIG IV R+E KG K+VA KL+ I E A+KHYAEH GK FF + Sbjct: 1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFED 60 Query: 66 LVRFITSGPVFAMVWEGDDVIALSRLMIGKTKVGEALPGTIRGDYASHTPLNLIHGSDSP 125 L+ FITSGPVFAMV EGDD IA +R M+GKT EA PGTIR DYA HT N+IHGSDSP Sbjct: 61 LIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSP 120 Query: 126 ESAAREIANFFAPDEPADYNKDIAAWM 152 ESA REI FFAPDE Y K + W+ Sbjct: 121 ESAQREIQLFFAPDEILSYQKAVDTWI 147 >Q8Y5X4.1 NDK_LISMO Nucleoside diphosphate kinase EC=2.7.4.6 Length = 147 Score = 199 bits (505), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 98/147 (66%), Positives = 112/147 (76%) Query: 6 MEQTYLMIKPDGVQRGLIGRIVARLEDKGFKLVAAKLIIITEEQAKKHYAEHEGKDFFPE 65 MEQTY+M+KPDGV+RGLIG IV R+E KG K+VA KL+ I E A+KHYAEH GK FF + Sbjct: 1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFED 60 Query: 66 LVRFITSGPVFAMVWEGDDVIALSRLMIGKTKVGEALPGTIRGDYASHTPLNLIHGSDSP 125 L+ FITSGPVFAMV EGDD IA +R M+GKT EA PGTIR DYA HT N+IHGSDSP Sbjct: 61 LIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSP 120 Query: 126 ESAAREIANFFAPDEPADYNKDIAAWM 152 ESA REI FFAPDE Y K + W+ Sbjct: 121 ESAQREIQLFFAPDEILSYQKAVDTWI 147 >C1KWM9.1 C1KWM9_LISMC Putative nucleoside diphosphate kinase Length = 147 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/147 (66%), Positives = 111/147 (75%) Query: 6 MEQTYLMIKPDGVQRGLIGRIVARLEDKGFKLVAAKLIIITEEQAKKHYAEHEGKDFFPE 65 MEQTY+M+KPDGV+RGLIG IV R+E KG K+VA KL+ I E A+KHYAEH GK FF + Sbjct: 1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFED 60 Query: 66 LVRFITSGPVFAMVWEGDDVIALSRLMIGKTKVGEALPGTIRGDYASHTPLNLIHGSDSP 125 L+ FITSGPVFAMV EGDD IA +R M+GKT EA PGTIR DYA HT N+IHGSDSP Sbjct: 61 LIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSDSP 120 Query: 126 ESAAREIANFFAPDEPADYNKDIAAWM 152 ESA REI FFAP E Y K I W+ Sbjct: 121 ESAKREIQLFFAPQEILSYQKAIDTWI 147 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 935,933,029 Number of extensions: 35936184 Number of successful extensions: 84930 Number of sequences better than 1.0e-05: 1930 Number of HSP's gapped: 84484 Number of HSP's successfully gapped: 1967 Length of query: 152 Length of database: 3,060,696,203 Length adjustment: 114 Effective length of query: 38 Effective length of database: 1,986,700,493 Effective search space: 75494618734 Effective search space used: 75494618734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)