BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0036.p
         (89 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLR7.1 B3KLR7_9BACI Protein-glutamate O-methyltransferase EC=2...   138   1e-31
B1DMH1.1 B1DMH1_9BACL MCP methyltransferase, CheR-type EC=2.1.1.80    136   6e-31
C0ZCD7.1 C0ZCD7_BREBN Chemotaxis protein methyltransferase EC=2....   129   7e-29
A6CSG4.1 A6CSG4_9BACI Chemotactic methyltransferase                   128   2e-28
Q65I27.1 Q65I27_BACLD Methyl-accepting chemotaxis proteins (MCPs...   126   7e-28

>B3KLR7.1 B3KLR7_9BACI Protein-glutamate O-methyltransferase EC=2.1.1.80
          Length = 267

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   VFKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
           +++ SE LKK + F KQNLL D+F+ G DLI+CRNVMIYFTE AK+KLY KF+ASL+PGG
Sbjct: 178 LYRFSENLKKEVSFHKQNLLTDRFEAGHDLIVCRNVMIYFTEGAKHKLYQKFAASLKPGG 237

Query: 61  YLFVGSTEQIFTPAQYGFESTETFFYRK 88
           +LFVGSTEQIF P QYG ES ETFFYRK
Sbjct: 238 FLFVGSTEQIFNPGQYGLESNETFFYRK 265


>B1DMH1.1 B1DMH1_9BACL MCP methyltransferase, CheR-type EC=2.1.1.80
          Length = 261

 Score =  136 bits (343), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 4   VSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGYLF 63
           VS+ LK  I F++QNLL D FD+ FDLI+CRNVMIYFTEEAK+ LY KF+++LRPGG LF
Sbjct: 174 VSDKLKNAITFKQQNLLYDSFDQSFDLIVCRNVMIYFTEEAKHLLYQKFASALRPGGLLF 233

Query: 64  VGSTEQIFTPAQYGFESTETFFYRK 88
           VGSTEQIF+P+QYGFES +TFFYR+
Sbjct: 234 VGSTEQIFSPSQYGFESADTFFYRR 258


>C0ZCD7.1 C0ZCD7_BREBN Chemotaxis protein methyltransferase EC=2.1.1.80
          Length = 257

 Score =  129 bits (324), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 72/87 (82%)

Query: 2   FKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGY 61
           +++++ +K+ + F+K NLL D FD  FDLIICRNVMIYFTEEAK++LYHKFS +L+PGG 
Sbjct: 169 YRITDEVKRKVTFKKHNLLADSFDSQFDLIICRNVMIYFTEEAKHELYHKFSRALKPGGV 228

Query: 62  LFVGSTEQIFTPAQYGFESTETFFYRK 88
           LFVGSTEQIF P QY  E+ +TFFYRK
Sbjct: 229 LFVGSTEQIFQPQQYQLETEDTFFYRK 255


>A6CSG4.1 A6CSG4_9BACI Chemotactic methyltransferase
          Length = 258

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 4   VSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGYLF 63
           VS  +K  + F+K NLL D+++   DLI+CRNVMIYFTEEAK ++YH FS++LRPGG LF
Sbjct: 173 VSPQIKSRVSFKKHNLLADRYESNHDLIVCRNVMIYFTEEAKEEIYHNFSSALRPGGVLF 232

Query: 64  VGSTEQIFTPAQYGFESTETFFYRKK 89
           VGSTEQIF PA+YG E+ +TFFYRKK
Sbjct: 233 VGSTEQIFNPAKYGLETEDTFFYRKK 258


>Q65I27.1 Q65I27_BACLD Methyl-accepting chemotaxis proteins (MCPs)
           methyltransferase
          Length = 255

 Score =  126 bits (316), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 73/87 (83%)

Query: 2   FKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGY 61
           FKV + ++KNI F+K NLL D +++ FD+I+CRNV+IYFTEEAK K+YHKFS SL+  G 
Sbjct: 168 FKVKDEIRKNIRFQKHNLLADPYEKDFDIIVCRNVLIYFTEEAKEKIYHKFSGSLKNKGI 227

Query: 62  LFVGSTEQIFTPAQYGFESTETFFYRK 88
           LFVGSTEQIF P +YGF+ST+TFFY+K
Sbjct: 228 LFVGSTEQIFNPEKYGFQSTDTFFYQK 254


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.142    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 524,170,515
Number of extensions: 18711300
Number of successful extensions: 53394
Number of sequences better than 1.0e-05: 734
Number of HSP's gapped: 53300
Number of HSP's successfully gapped: 734
Length of query: 89
Length of database: 3,060,696,203
Length adjustment: 59
Effective length of query: 30
Effective length of database: 2,504,856,318
Effective search space: 75145689540
Effective search space used: 75145689540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 125 (52.8 bits)