BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0019.p
         (199 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKT8.1 B3KKT8_9BACI Putative uncharacterized protein                154   3e-36
B1DM23.1 B1DM23_9BACL Putative uncharacterized protein                 78   5e-13

>B3KKT8.1 B3KKT8_9BACI Putative uncharacterized protein
          Length = 200

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 112/190 (58%), Gaps = 4/190 (2%)

Query: 1   MNCREAQDSIPLLWDAPPTDPRRILLERHIVNCPYCSAEWALWQESSELMRETQIEISEE 60
           M C EAQ+ +  +WD P  D +R  L  H+  C  C+AE+ +W ES  ++   + EI + 
Sbjct: 1   MTCNEAQELMETVWDLPDNDLQRQRLIAHVQTCSSCAAEYEMWVESQNMVHALEHEIPDM 60

Query: 61  RAEAVNLRVMERIYLESPWLMPGDGKSAGNSAAFRRRLSLWIACFLAVFISSFLYFTMFK 120
            AE +N  VM+RIY + PWL+    KS   S  FR+RL+L IA FLA+F+ SF+YF    
Sbjct: 61  DAEQINRNVMDRIYRDFPWLVEETSKSRAVSRVFRKRLTLMIAGFLALFVCSFVYFAATG 120

Query: 121 TPANTT--VAQSGIVETGVA--GLSLDWSSSYPDSESGGGIIEPLVVSMGPTHPQYWMML 176
              +       +GI+ TGVA    SL+    Y   ++  GII+P VV M PT P+YWM+L
Sbjct: 121 NQPDPVPEAVTTGIIPTGVADTAQSLNTKDDYNIPKTNSGIIDPFVVDMSPTQPEYWMIL 180

Query: 177 SMLGVGLSIF 186
           S+LG+G ++F
Sbjct: 181 SLLGIGCALF 190


>B1DM23.1 B1DM23_9BACL Putative uncharacterized protein
          Length = 137

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 63  EAVNLRVMERIYLESPWLMPGDGKSAGNSAAFRRRLSLWIACFLAVFISSFLYFTM---F 119
           E VN  VM+RIY E  WLMP   KS   S AFRR L++ ++  LA+F  S ++F      
Sbjct: 2   EHVNRSVMDRIYAEQSWLMPVSQKSYYFSPAFRRNLAIVLSACLAIFACSLIFFIKGNEH 61

Query: 120 KTPANTTVAQSGIVETGVAGLSLDWSSSYPDSESGGGIIEPLVVSMGPTHPQYWMMLSML 179
            TP       +G+++T  A  S D+  S         + +P V+ + PT PQYW+ LS+L
Sbjct: 62  GTPEEKMAQLTGLMDTANASGS-DFVISAEFEVPVASVSDPFVLQVVPTFPQYWVALSLL 120

Query: 180 GVGLSIF 186
           GV +++ 
Sbjct: 121 GVVMTLL 127


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,180,639,067
Number of extensions: 43918150
Number of successful extensions: 110214
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 110213
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 70
Effective length of database: 1,845,385,268
Effective search space: 129176968760
Effective search space used: 129176968760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)