BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0018.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKT9.1 B3KKT9_9BACI Phosphoglycerate mutase 268 2e-70 B1DM22.1 B1DM22_9BACL Phosphoglycerate mutase 213 9e-54 C1RRL7.1 C1RRL7_9SPHI Fructose-2,6-bisphosphatase 154 3e-36 C3BVI3.1 C3BVI3_9BACI Phosphoglycerate mutase 154 5e-36 C3BE48.1 C3BE48_BACMY Phosphoglycerate mutase 150 5e-35 >B3KKT9.1 B3KKT9_9BACI Phosphoglycerate mutase Length = 195 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 122/194 (62%), Positives = 160/194 (82%) Query: 4 MLIGLIRHGLTDWNAEGRIQGQSDIPLNDEGRRQAEMLGDRLLQETYRWDYCITSSLSRA 63 M IGL+RHGLTDWNA G+IQGQ+DIPLN+EGRRQA +LG+RLLQE +RWD+ I+S LSRA Sbjct: 1 MQIGLVRHGLTDWNALGKIQGQTDIPLNEEGRRQARLLGERLLQEPFRWDFAISSGLSRA 60 Query: 64 AETGKIIAAKLGIPLLEPDERIRERAYGQVEGMTAAQREEKWGKDWNLLPLGQESDEQLQ 123 ET KII++ L IPL PD R+RER YGQVEG+TA +RE ++G DW++L LGQE+D +LQ Sbjct: 61 EETAKIISSMLNIPLAPPDNRLRERKYGQVEGLTAEERETRFGADWHMLDLGQETDLELQ 120 Query: 124 ARALAFMEEIAALYPDKNILVISHGGFLAQLYIALYKDKYSERLGNLSLTILEKKEKEWN 183 +R L F++++ +P+ NILV+SHGGFLAQLY + + SER+GNLSLT+LE+KE +W+ Sbjct: 121 SRGLVFLDDMWHKHPEANILVVSHGGFLAQLYKLVCRGALSERIGNLSLTVLERKEDDWS 180 Query: 184 PLLYNCTRHILQQQ 197 PLL+NCT+H+L Q Sbjct: 181 PLLFNCTKHLLTNQ 194 >B1DM22.1 B1DM22_9BACL Phosphoglycerate mutase Length = 197 Score = 213 bits (541), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 141/190 (74%) Query: 4 MLIGLIRHGLTDWNAEGRIQGQSDIPLNDEGRRQAEMLGDRLLQETYRWDYCITSSLSRA 63 M+IG++RHG TDWNA G+IQGQ+DIPLN+ G++QA L +RL + WD I+S L RA Sbjct: 1 MIIGMVRHGNTDWNALGKIQGQTDIPLNELGKKQANALAERLSLDEKLWDAVISSDLQRA 60 Query: 64 AETGKIIAAKLGIPLLEPDERIRERAYGQVEGMTAAQREEKWGKDWNLLPLGQESDEQLQ 123 +T ++IA KL IPLLE D R+RER +G+VEG+T +R E+WG++W + G E+DE+++ Sbjct: 61 RQTAEVIADKLDIPLLEGDSRLRERNFGEVEGLTLPERVERWGENWREVARGLETDEEVR 120 Query: 124 ARALAFMEEIAALYPDKNILVISHGGFLAQLYIALYKDKYSERLGNLSLTILEKKEKEWN 183 AR +AF+++ P+ +LV+SHGGFLAQ++ L D + LGNLS +IL+ K+++W Sbjct: 121 ARGMAFLQDWQKQRPEGRLLVVSHGGFLAQMFDTLCADLEKQHLGNLSYSILQLKDEQWA 180 Query: 184 PLLYNCTRHI 193 PLLYNCTRH+ Sbjct: 181 PLLYNCTRHL 190 >C1RRL7.1 C1RRL7_9SPHI Fructose-2,6-bisphosphatase Length = 191 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 117/193 (60%), Gaps = 9/193 (4%) Query: 6 IGLIRHGLTDWNAEGRIQGQSDIPLNDEGRRQAEMLGDRLLQETYRWDYCITSSLSRAAE 65 I LIRHG T WN EG++QG +DI L++EG QA LG RL E+ WD TS LSRA Sbjct: 4 IALIRHGSTAWNKEGKMQGSTDIALDNEGLEQARKLGIRLSDES--WDIVYTSHLSRAKR 61 Query: 66 TGKIIAAKLGIPLLEPDERIRERAYGQVEGMTAAQREEKWGKDWNLLPLGQESDEQLQAR 125 TG+IIAA+LGI + D+RI E + GQ EG T A R KWG W L LG E+++ + R Sbjct: 62 TGEIIAAELGIEDVREDKRIMEVSGGQTEGTTEADRIAKWGTGWRQLELGMETEQAVLTR 121 Query: 126 ALAFMEEIAALYPDKNILVISHGGF----LAQLYIALYKDKYSERLGNLSLTILEKKEKE 181 +AF++++ + K+I+++SHG F L +L +L +D L N S+T + Sbjct: 122 GMAFLDDLMQEHAGKHIVIVSHGSFIRHLLKKLAPSLVQDS---NLKNTSVTRFTVNDDV 178 Query: 182 WNPLLYNCTRHIL 194 W LYNCT H++ Sbjct: 179 WECELYNCTAHLV 191 >C3BVI3.1 C3BVI3_9BACI Phosphoglycerate mutase Length = 191 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 3/192 (1%) Query: 3 VMLIGLIRHGLTDWNAEGRIQGQSDIPLNDEGRRQAEMLGDRLLQETYRWDYCITSSLSR 62 + +G+IRHG T WN EGR QG S+IPL+ G +A L +RL E +WD +S L R Sbjct: 1 MTTLGIIRHGSTHWNKEGRAQGNSNIPLDQAGLSEAYKLAERLATE--KWDVIYSSDLLR 58 Query: 63 AAETGKIIAAKLGIPLLEPDERIRERAYGQVEGMTAAQREEKWGKDWNLLPLGQESDEQL 122 A +T + I + + + R+RE + GQ+EG T +R KWG +W L LG ES + + Sbjct: 59 AKQTAEAIEKNIENIQIHLEPRLREVSGGQIEGTTEDERISKWGDNWRELDLGIESADSV 118 Query: 123 QARALAFMEEIAALYPDKNILVISHGGFLAQLYIALYKD-KYSERLGNLSLTILEKKEKE 181 +ARA+ F+EEI YP+KNIL++SHG F+ QL L E N S+T + K E Sbjct: 119 KARAIPFIEEITYKYPNKNILIVSHGSFIKQLLKELVPHLSMIESPKNTSITKIIKIENG 178 Query: 182 WNPLLYNCTRHI 193 W+P LYNCT H+ Sbjct: 179 WDPELYNCTVHL 190 >C3BE48.1 C3BE48_BACMY Phosphoglycerate mutase Length = 191 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 114/192 (59%), Gaps = 3/192 (1%) Query: 3 VMLIGLIRHGLTDWNAEGRIQGQSDIPLNDEGRRQAEMLGDRLLQETYRWDYCITSSLSR 62 + +G+IRHG T WN EGR QG S+IPL+ G +A L +RL E +W+ +S L R Sbjct: 1 MTTLGIIRHGSTHWNKEGRAQGNSNIPLDQAGLSEAYKLAERLATE--KWNVIYSSDLLR 58 Query: 63 AAETGKIIAAKLGIPLLEPDERIRERAYGQVEGMTAAQREEKWGKDWNLLPLGQESDEQL 122 A +T + I + + D R+RE + GQ+EG T +R KWG +W L LG ES + + Sbjct: 59 AKQTAEAIEKNIENIEIHLDPRLREVSGGQIEGTTEDERISKWGDNWRELDLGIESADSV 118 Query: 123 QARALAFMEEIAALYPDKNILVISHGGFLAQLYIALYKD-KYSERLGNLSLTILEKKEKE 181 +ARA+ F+EEI YP+KNIL++SHG F+ QL L E N S+T + K E Sbjct: 119 KARAIPFIEEITYKYPNKNILIVSHGSFIKQLLKELVPHLSMIESPKNTSITKIIKIENG 178 Query: 182 WNPLLYNCTRHI 193 W+ LYNCT H+ Sbjct: 179 WDSELYNCTVHL 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,178,018,518 Number of extensions: 46522679 Number of successful extensions: 124132 Number of sequences better than 1.0e-05: 2798 Number of HSP's gapped: 122777 Number of HSP's successfully gapped: 2822 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)