BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0017.p (362 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKU1.1 B3KKU1_9BACI Putative uncharacterized protein 341 7e-92 C0ZCF4.1 C0ZCF4_BREBN Putative uncharacterized protein 189 4e-46 B1DM21.1 B1DM21_9BACL Putative uncharacterized protein 141 1e-31 B7DPI8.1 B7DPI8_9BACL Putative uncharacterized protein 107 1e-21 C1PTA1.1 C1PTA1_ALIAC Putative uncharacterized protein 100 4e-19 >B3KKU1.1 B3KKU1_9BACI Putative uncharacterized protein Length = 384 Score = 341 bits (874), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 177/369 (47%), Positives = 232/369 (62%), Gaps = 14/369 (3%) Query: 2 MNLADMLNFADISQLTAIAGRYQCDCKRNSKHDLIQSILITLGSRQFMESHIRECAPEDL 61 MNLADML +ADI QL+ IA Y CD KRNSKH+LIQSIL LG R+F E + +P DL Sbjct: 1 MNLADMLTYADIGQLSNIANHYDCDAKRNSKHELIQSILSKLGRREFFEEQVSSLSPSDL 60 Query: 62 RFLNTLLFDERSQFSLEDLLAAARQAS------------FDTAPGKSGGYREMVARFKNS 109 RFLN L+FD R+ +SLE+L AA R + A K+ RE VAR++ S Sbjct: 61 RFLNNLVFDTRTGYSLEELTAAIRHTADLEEKEDKASSNKKAAAAKTESPREAVARYRRS 120 Query: 110 GWLFSGASQQSRYLFRVPQDLKTRFRERMGDYLREQIPPV-GEPAIYRSEGEMLAGDLLL 168 GWLF+G + ++YLF+VP DLK RFR+ + + L + + + +P YR E + A DL L Sbjct: 121 GWLFNGFTHSTKYLFQVPSDLKERFRDVLRERLHQNLERLPHDPEAYRDEQGLAAEDLKL 180 Query: 169 FLRYIQENEPELNQEGALHKRYQQGVMNAIQIPEPLLGKGGWRFGYGRACEHYPPRLALI 228 L+Y+ ++ ELNQEG +++R QQ +M+ + I EPL+ KG WRFGYGR+C YP R AL+ Sbjct: 181 ILKYVGGHDIELNQEGFMYRRNQQQLMSTLHISEPLITKGAWRFGYGRSCIEYPDRFALL 240 Query: 229 VDYARHRRWTTEAGYRLKLTLAGETLLEQGKTEKLIQLYSFWLKLYKGAIPNLPSLVYWI 288 DYA ++W E RL L+ G + LE+G +IQ++ FWL+LYKGAIPN+ SLVYWI Sbjct: 241 YDYAYAKKWIRENHARLILSETGASFLEEGNQVGVIQIFRFWLRLYKGAIPNISSLVYWI 300 Query: 289 SVSAGKWVAVASLVESLGWLVKPFYYDDAASILEQXXXXXXXXXXXXXXXETPD-GPVVM 347 S A WV ASL ESLGWL++PFYYD +ILEQ E+ G Sbjct: 301 SQCARDWVTAASLYESLGWLIRPFYYDSPQNILEQRIIRMLMHLGMLRIGESQSMGTSYK 360 Query: 348 MTPWGLEAA 356 MT GL+AA Sbjct: 361 MTALGLKAA 369 >C0ZCF4.1 C0ZCF4_BREBN Putative uncharacterized protein Length = 372 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 175/323 (54%), Gaps = 4/323 (1%) Query: 2 MNLADMLNFADISQLTAIAGRYQCDCKRNSKHDLIQSILITLGSRQFMESHIRECAPEDL 61 MNLA++L + DI QL IA Y C+C +SK++LI S+L +L R + + + + + Sbjct: 1 MNLAEILVYTDIRQLHQIANHYGCECNPHSKNELITSLLSSLRHRLTISQEVEQLSSAET 60 Query: 62 RFLNTLLFDERSQFSLEDLLAAARQASFDTAPGKSGGYREMVARFKNSGWLFSGASQQSR 121 FL L D+R+ SLEDLLA A A K R+ VA GW+F S+ Sbjct: 61 HFLLQLFLDKRTVMSLEDLLAKAGVALECEKEKKQEEGRKFVAAAMKRGWIFPAKSKTVG 120 Query: 122 YLFRVPQDLKTRFRERMGDYLREQIPPVGE-PAIYRSEGEMLAGDLLLFLRYIQENEPEL 180 +++P D++ + + RE + P YR EG L D++ FL+++Q+ L Sbjct: 121 Q-YQIPLDIREPYLQAWLTKWRESNALLHPGPQAYRDEGTALCDDIMQFLQFLQQEPVPL 179 Query: 181 NQEGALHKRYQQGVMNAIQIPEPLLGKGGWRFGYGRACEHYPPRLALIVDYARHRRWTTE 240 EG ++KR+QQ + + + E L WRFGYG + YP R +L+ D+ + RW E Sbjct: 180 TAEGGMYKRHQQQLFQFLYVKEEPLLPQKWRFGYGLHFDLYPDRFSLLYDFCYYHRWIVE 239 Query: 241 AGYRLKLTLAGETLLEQGKTEKLIQ-LYSFWLKLYKGAIPNLPSLVYWIS-VSAGKWVAV 298 ++ +T AG LEQ +++L + FW++LYK A+PNLP LV I +++ WV+ Sbjct: 240 VDGKVAVTEAGRERLEQPYSDQLYHDVIRFWMRLYKRAVPNLPMLVQLIPLIASAGWVSQ 299 Query: 299 ASLVESLGWLVKPFYYDDAASIL 321 SL+++L +K FYYD IL Sbjct: 300 QSLMDTLLHWMKEFYYDSPTDIL 322 >B1DM21.1 B1DM21_9BACL Putative uncharacterized protein Length = 257 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 23/167 (13%) Query: 2 MNLADMLNFADISQLTAIAGRYQCDCKRNSKHDLIQSILITLGSRQFMESHIRECAPEDL 61 MNL+DML +ADI QL+ IA YQC+C +SK+DLIQSIL T+ + E+ I +++ Sbjct: 1 MNLSDMLGYADIQQLSRIASVYQCECNGHSKNDLIQSILSTVSRKDVFEAQISSMKLDEM 60 Query: 62 RFLNTLLFDERSQFSLEDLLAAARQASF-----------------------DTAPGKSGG 98 RFLN+LLF+ R FSLE+L+A +Q+ F + K G Sbjct: 61 RFLNSLLFESRDSFSLEELIARVQQSKFGELEPPAEEPPQKKTKRTKKKQAEAEAPKESG 120 Query: 99 YREMVARFKNSGWLFSGASQQSRYLFRVPQDLKTRFRERMGDYLREQ 145 REM++RFK+ GWLF+G + +RY+F+VPQDL+TRFRE + + +Q Sbjct: 121 PREMISRFKHQGWLFNGVTGTNRYMFQVPQDLRTRFRETLRKKVLQQ 167 >B7DPI8.1 B7DPI8_9BACL Putative uncharacterized protein Length = 465 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 14/321 (4%) Query: 2 MNLADMLNFADISQLTAIAGRYQCDCKRNSKHDLIQSILITLGSRQFMESHIRECAPEDL 61 M L + LN A + L IA C SK D++QSIL ++ + E Sbjct: 1 MRLNECLNHASVPTLQRIAKSLHVACVPYSKLDILQSILEAWLDPDTRKTMVHRWCTEWD 60 Query: 62 RFLNTLLFDERSQFSLEDLLAAARQASFDTAPGKSGGYREMVARFKNSGWLFSGASQQSR 121 + ++ R F+ E++ S AP G + R SGWL+ ++ Sbjct: 61 AAMRRVVLQPRHAFAREEM-------SSLLAPYGDGA----IDRALESGWLYVHPDPATK 109 Query: 122 YLFRVPQDLKTRFRERMGDYLREQIPP-VGEPAIYRSEGEMLAGDLLLFLRYIQENEPEL 180 + VP+D+ R Q+ + +P R E + + DL + Y+++++ L Sbjct: 110 FPLTVPEDVHEACHAHYVAGWRSQVAKRLDDPPCVRDEEDAILADLETLVAYVRDHDVRL 169 Query: 181 NQEGALHKRYQQGVMNAIQIPEPLLGKGGWRFGYGRACEHYPPRLALIVDYARHRRWTTE 240 GA++KR + +M ++ E L WRFGYG+ YP RLAL+ D+A E Sbjct: 170 TTTGAMYKRNLEQLMQLFKVEESL-DLPRWRFGYGKRTFAYPDRLALVYDFACDEGVLVE 228 Query: 241 AGYRLKLTLAG-ETLLEQGKTEKLIQLYSFWLKLYKGAIPNLPSLVYWISVSAGKWVAVA 299 R+++ A + + KL +L ++ Y+G IP LP ++ I G W+ +A Sbjct: 229 QDGRVEVDDARWLSFASRLTVVKLRRLLRHYIASYRGPIPRLPDVLRLIHRLGGDWLDLA 288 Query: 300 SLVESLGWLVKPFYYDDAASI 320 SL E + FYYD + Sbjct: 289 SLYELCLPFLNSFYYDSTEDV 309 >C1PTA1.1 C1PTA1_ALIAC Putative uncharacterized protein Length = 465 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/327 (26%), Positives = 145/327 (44%), Gaps = 26/327 (7%) Query: 2 MNLADMLNFADISQLTAIAGRYQCDCKRNSKHDLIQSIL---ITLGSRQFMESHIRECAP 58 M L + LN A + L IA C SK D++QSIL + +R+ M R C Sbjct: 1 MRLNECLNHASVPTLQRIAKSLHLTCVPYSKLDILQSILEAWLDPDARKTMVD--RWCTE 58 Query: 59 EDLRFLNTLLFDERSQFSLEDLLAAARQASFDTAPGKSGGYREMVARFKNSGWLFSGASQ 118 D + ++ R F+ E++ AS AP G + R +GWL+ Sbjct: 59 WDA-AMRRVVLQPRHAFAREEM------ASL-LAPYGDGA----IDRAFEAGWLYVHPDP 106 Query: 119 QSRYLFRVPQDLKTRFRERMGDYLREQIPP-VGEPAIYRSEGEMLAGDLLLFLRYIQENE 177 +++ VP D++ R Q+ + +P E + + DL + Y+++++ Sbjct: 107 ATKFPLIVPVDVQAACHAHYVAAWRAQVAKRLDDPPCVHDEEDAILADLETLVAYVRDHD 166 Query: 178 PELNQEGALHKRYQQGVMNAIQIPEPLLGKGGWRFGYGRACEHYPPRLALIVDYARHRRW 237 L GA++KR + +M ++ E L WRFGYG+ YP RLALI D+A Sbjct: 167 VRLTTTGAMYKRNLEQLMQLFEVEESL-ELPRWRFGYGKRAFAYPDRLALIYDFACDEGV 225 Query: 238 TTEAGYRLKLT----LAGETLLEQGKTEKLIQLYSFWLKLYKGAIPNLPSLVYWISVSAG 293 E R+++ +A ++ L K + ++ Y + Y+G IP L ++ I G Sbjct: 226 IVEQDGRVEVDDARWMAWKSRLTVVKLRRFLRHY---IASYRGPIPRLADVLRLIRRLGG 282 Query: 294 KWVAVASLVESLGWLVKPFYYDDAASI 320 W+ +ASL E + FYYD + Sbjct: 283 DWLDLASLYELCLPFLNAFYYDSTEDV 309 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,143,449,026 Number of extensions: 87937030 Number of successful extensions: 178245 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 178232 Number of HSP's successfully gapped: 7 Length of query: 362 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 225 Effective length of database: 1,770,017,148 Effective search space: 398253858300 Effective search space used: 398253858300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)