BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0015.p
         (59 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKU2.1 B3KKU2_9BACI Putative uncharacterized protein                 92   1e-17
B1DM19.1 B1DM19_9BACL Putative uncharacterized protein                 69   2e-10

>B3KKU2.1 B3KKU2_9BACI Putative uncharacterized protein
          Length = 59

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 52/58 (89%)

Query: 1  MDKMKATYEVMLGLAAEMVWDEALRKRRTDILYREIDTALAAGDKTAFRNLTEELKSL 58
          MDKMK TYEVMLGLAAEMVWDEALRK R++ LY+EID ALA+GD+ AFR LT+EL++L
Sbjct: 1  MDKMKVTYEVMLGLAAEMVWDEALRKHRSEELYKEIDEALASGDEVAFRTLTDELRTL 58


>B1DM19.1 B1DM19_9BACL Putative uncharacterized protein
          Length = 60

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 40/58 (68%)

Query: 1  MDKMKATYEVMLGLAAEMVWDEALRKRRTDILYREIDTALAAGDKTAFRNLTEELKSL 58
          MDKMK  YE MLGLAAEMV DEA+ K R+D +Y+ ID ALA GD+  F  L  +L  L
Sbjct: 1  MDKMKVAYEAMLGLAAEMVLDEAVHKFRSDRIYKAIDQALAVGDEDTFYRLAAQLNQL 58


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 283,982,143
Number of extensions: 7186014
Number of successful extensions: 21496
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 21496
Number of HSP's successfully gapped: 2
Length of query: 59
Length of database: 3,060,696,203
Length adjustment: 31
Effective length of query: 28
Effective length of database: 2,768,644,738
Effective search space: 77522052664
Effective search space used: 77522052664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)