BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0013.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKU4.1 B3KKU4_9BACI Rieske (2Fe-2S) domain protein 274 2e-72 B1DM17.1 B1DM17_9BACL Rieske (2Fe-2S) domain protein 215 9e-55 C3BIA4.1 C3BIA4_9BACI Menaquinol-cytochrome c reductase iron-sul... 187 3e-46 C3B1J3.1 C3B1J3_BACMY Menaquinol-cytochrome c reductase iron-sul... 187 3e-46 C3AJP1.1 C3AJP1_BACMY Menaquinol-cytochrome c reductase iron-sul... 187 3e-46 >B3KKU4.1 B3KKU4_9BACI Rieske (2Fe-2S) domain protein Length = 181 Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 139/161 (86%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 MSRRQFLTYTLGGATA+M AG +LPM+RFAVDP+L K G F+KVAE +KIT+ PQEF Sbjct: 21 MSRRQFLTYTLGGATAYMAAGVVLPMLRFAVDPILQNKEEGSFVKVAEESKITNDPQEFH 80 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 FEL QQDGWY STATLTAWIRK++ GEI ALSPICKHLGC VGWNN+K +PDEYHCPCHG Sbjct: 81 FELKQQDGWYNSTATLTAWIRKNDQGEIVALSPICKHLGCLVGWNNNKNFPDEYHCPCHG 140 Query: 121 ARYTKIGKNLAVAPKPLDQYKTKIDGDWVYLGEIVPNTEVK 161 ARYT GKNLAVAPKPLDQY+TKI+ W+YLG IVPNT VK Sbjct: 141 ARYTPDGKNLAVAPKPLDQYETKIENGWIYLGAIVPNTVVK 181 >B1DM17.1 B1DM17_9BACL Rieske (2Fe-2S) domain protein Length = 176 Score = 215 bits (548), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 98/160 (61%), Positives = 122/160 (76%), Gaps = 2/160 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 MSRRQFL+YTLGG TAFM GA+LPM+RFAVDP+L KK G ++KV E +K+T PQEF Sbjct: 19 MSRRQFLSYTLGGTTAFMVGGAVLPMVRFAVDPLLAKKAEGTWVKVVEESKVTTEPQEFK 78 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ Q DGWY S L+AWI KD N +++ALSP+CKHLGCT+GWN + EY CPCHG Sbjct: 79 FQIHQVDGWYVSDPELSAWITKDANNQVFALSPVCKHLGCTIGWNTLGHH--EYDCPCHG 136 Query: 121 ARYTKIGKNLAVAPKPLDQYKTKIDGDWVYLGEIVPNTEV 160 ARYT GKNLAVAP PLD+Y+ K++ +VY+G I N+ V Sbjct: 137 ARYTVDGKNLAVAPHPLDEYEVKVENGFVYVGPIKANSRV 176 >C3BIA4.1 C3BIA4_9BACI Menaquinol-cytochrome c reductase iron-sulfur subunit Length = 170 Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 84/163 (51%), Positives = 112/163 (68%), Gaps = 2/163 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 +SRRQFL YTL G FM AG ++PM RFA+DPVL K+ GE + VA+ +IT P+ F Sbjct: 8 VSRRQFLNYTLTGVGGFMAAGILMPMTRFALDPVLRKEAGGEMVAVAQVKEITTEPKRFD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ Q DGWY S +AW+ KDE+G+I A SP+CKHLGCTV WN+DK++P+++ CPCHG Sbjct: 68 FKVKQVDGWYKSEEPKSAWVHKDESGDIVAFSPVCKHLGCTVNWNSDKSHPNQFFCPCHG 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIVPNTEVK 161 RYTK G N+ P PLD Y++K+ +YLG+ P K Sbjct: 128 GRYTKDGINIKGTPPLAPLDVYESKVKDGTLYLGKAKPRGGAK 170 >C3B1J3.1 C3B1J3_BACMY Menaquinol-cytochrome c reductase iron-sulfur subunit Length = 170 Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 84/163 (51%), Positives = 112/163 (68%), Gaps = 2/163 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 +SRRQFL YTL G FM AG ++PM RFA+DPVL K+ GE + VA+ +IT P+ F Sbjct: 8 VSRRQFLNYTLTGVGGFMAAGILMPMTRFALDPVLRKEAGGEMVAVAQVKEITTEPKRFD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ Q DGWY S +AW+ KDE+G+I A SP+CKHLGCTV WN+DK++P+++ CPCHG Sbjct: 68 FKVKQVDGWYKSEEPKSAWVHKDESGDIVAFSPVCKHLGCTVNWNSDKSHPNQFFCPCHG 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIVPNTEVK 161 RYTK G N+ P PLD Y++K+ +YLG+ P K Sbjct: 128 GRYTKDGINIKGTPPLAPLDVYESKVKDGTLYLGKAKPRGGAK 170 >C3AJP1.1 C3AJP1_BACMY Menaquinol-cytochrome c reductase iron-sulfur subunit Length = 170 Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 84/163 (51%), Positives = 112/163 (68%), Gaps = 2/163 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 +SRRQFL YTL G FM AG ++PM RFA+DPVL K+ GE + VA+ +IT P+ F Sbjct: 8 VSRRQFLNYTLTGVGGFMAAGILMPMTRFALDPVLRKEAGGEMVAVAQVKEITTEPKRFD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ Q DGWY S +AW+ KDE+G+I A SP+CKHLGCTV WN+DK++P+++ CPCHG Sbjct: 68 FKVKQVDGWYKSEEPKSAWVHKDESGDIVAFSPVCKHLGCTVNWNSDKSHPNQFFCPCHG 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIVPNTEVK 161 RYTK G N+ P PLD Y++K+ +YLG+ P K Sbjct: 128 GRYTKDGINIKGTPPLAPLDVYESKVKDGTLYLGKAKPRGGAK 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,069,877,976 Number of extensions: 44327303 Number of successful extensions: 89311 Number of sequences better than 1.0e-05: 306 Number of HSP's gapped: 89441 Number of HSP's successfully gapped: 306 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)