BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0011.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKU6.1 B3KKU6_9BACI Cytochrome c class I 440 e-122 B1DM15.1 B1DM15_9BACL Cytochrome c class I 343 1e-92 Q5WGR1.1 Q5WGR1_BACSK Menaquinol-cytochrome c reductase cytochro... 190 1e-46 C0ZCF9.1 C0ZCF9_BREBN Menaquinol-cytochrome c reductase cytochro... 187 1e-45 Q81SU9.1 Q81SU9_BACAN Menaquinol-cytochrome c reductase, cytochr... 180 1e-43 >B3KKU6.1 B3KKU6_9BACI Cytochrome c class I Length = 295 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 203/291 (69%), Positives = 241/291 (82%), Gaps = 2/291 (0%) Query: 1 MAHGDNSKEKIVYVGDSRVRRGSGFITPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXX 60 MAHG S EK+VYVGDSRV++GSG++TPPDYTAYPGKSEAFIPNFLLKEWM Sbjct: 1 MAHGHKSDEKVVYVGDSRVKKGSGWVTPPDYTAYPGKSEAFIPNFLLKEWMVGVVVLVGF 60 Query: 61 XXXTISEPAPLGFPANANATVIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFGS 120 TISEPAPLG+PA+ A+VIP+PDWYFLFLY+YLKLPYASGDY+VLGT+GV+GVAFGS Sbjct: 61 LVLTISEPAPLGYPADPGASVIPMPDWYFLFLYEYLKLPYASGDYVVLGTIGVSGVAFGS 120 Query: 121 LLLAPFLDTGRERRFYRRPIASSLMFLSLIAIVYLTNTAWTEYKHEMAETGQIPEDVQRE 180 LLL PFLDTG+ERRFY+RPI S+LM LSL A++YLTN AWT Y+HE+ TGQ PE +QRE Sbjct: 121 LLLVPFLDTGKERRFYKRPITSALMILSLFAVIYLTNAAWTHYQHELEATGQKPEHIQRE 180 Query: 181 EKAAENKAKGLPTTSAVQAKE--IAIVDKDDPAMGLFKQATCVTCHAVDMKGAGGPSLRG 238 E+A E +A GLPTTS Q ++ +AIVDKD+PAM FK ATC++CHA D+KGA GPSLRG Sbjct: 181 EEAHEKRAAGLPTTSGKQPEDSIVAIVDKDNPAMETFKTATCISCHAADLKGASGPSLRG 240 Query: 239 VGDTHDKEAILAIIKNGQGQMPPMHDTAIAAGLSEQDIDSLAAWLAKQKSE 289 VGDTH KE I+AII+NGQG MPPM D A+ AG++E+ +D LA WLA QK+E Sbjct: 241 VGDTHTKEEIVAIIENGQGSMPPMKDIALGAGVTEEQLDQLADWLASQKAE 291 >B1DM15.1 B1DM15_9BACL Cytochrome c class I Length = 290 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 175/292 (59%), Positives = 206/292 (70%), Gaps = 9/292 (3%) Query: 1 MAHGDNSKEKIVYVGDSRVRRGSGFITPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXX 60 MAHG S EK+VYVGDSRV++ + PPDYT+YPGKSEAFIPNFLLKEWM Sbjct: 1 MAHGHKSNEKVVYVGDSRVKKSNHPNIPPDYTSYPGKSEAFIPNFLLKEWMVGCVVLVGF 60 Query: 61 XXXTISEPAPLGFPAN-ANATVIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFG 119 TI+E APLG+PA+ NA+ IP+PDWYFLFLYQ+LK P+ SGDYIVLGT+GV V FG Sbjct: 61 LTWTIAEGAPLGYPADPTNASFIPMPDWYFLFLYQFLKYPWVSGDYIVLGTMGVPAVMFG 120 Query: 120 SLLLAPFLDTGRERRFYRRPIASSLMFLSLIAIVYLTNTAWTEYKHEMAETGQIPEDVQR 179 LLLAPFLDTG+ERRFYRRPIASSLMFLSLIA VYLT +W+ Y HEM T IPE R Sbjct: 121 GLLLAPFLDTGKERRFYRRPIASSLMFLSLIACVYLTVISWSHYTHEMEATNSIPEHKVR 180 Query: 180 EEKAAENKAKGLPTTSAVQ-AKEIAIVDKDDPAMGLFKQATCVTCHAVDMKG--AGGPSL 236 EEKA E KG SA + AK +A+VD +DPAM + K+A CV CHA D+KG P+L Sbjct: 181 EEKAREAHEKGQEAPSASKPAKTVALVDANDPAMDIVKKAQCVACHANDLKGNPPQVPAL 240 Query: 237 RGVGDTHDKEAILAIIKNGQGQMPPMHDTAIAAGLSEQDIDSLAAWLAKQKS 288 GVGD KE ++ + NG+G MP D LS ++ID L WLAKQK+ Sbjct: 241 TGVGDRLSKEELVETVTNGRGGMPSFKDQ-----LSAEEIDQLTTWLAKQKA 287 >Q5WGR1.1 Q5WGR1_BACSK Menaquinol-cytochrome c reductase cytochrome b/c subunit EC=1.10.2.- Length = 258 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/277 (41%), Positives = 159/277 (57%), Gaps = 35/277 (12%) Query: 13 YVGDSRVR-RGSGFITPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXXXXXTISEPAPL 71 +VGDSRV+ G P DY+ YPGK+EAF PNFLL+EWM T++ PAPL Sbjct: 9 FVGDSRVKADGRKPNIPKDYSEYPGKTEAFWPNFLLREWMVGAVFLMGFLCLTVAHPAPL 68 Query: 72 GFPANANATVIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFGSLLLAPFLDTGR 131 A+ IP+PDWYFLFLYQ LK +ASGD+ VLGT+ + GVAFG+LLLAP+LDT + Sbjct: 69 EAIADPLEAYIPLPDWYFLFLYQLLKYEFASGDFNVLGTVVIPGVAFGALLLAPWLDTSK 128 Query: 132 ERRFYRRPIASSLMFLSLIAIVYLTNTAWTEYKHEMA-ETGQIPEDVQREEKAAENKAKG 190 ERR +RRPIA+S+M L + ++VYLT + ++ E A + G++ E + +E+A +G Sbjct: 129 ERRPHRRPIATSIMLLGVASVVYLTWESVDQHDWEAAAQQGKLVEGAEIDEEA-----EG 183 Query: 191 LPTTSAVQAKEIAIVDKDDPAMGLFKQATCVTCHAVDMKG-AGGPSLRGVGDTHDKEAIL 249 S+ Q +C+ CH M G AG P+L T E ++ Sbjct: 184 FEIYSS--------------------QDSCIQCHGDQMTGGAGAPNLLETEKT--PEEVI 221 Query: 250 AIIKNGQGQMPPMHDTAIAAGLSEQDIDSLAAWLAKQ 286 II+NGQG MP T SE+++ LA ++A Sbjct: 222 EIIQNGQGAMPADQFTG-----SEEELQILAEFIANH 253 >C0ZCF9.1 C0ZCF9_BREBN Menaquinol-cytochrome c reductase cytochrome b/c subunit EC=1.10.2.- Length = 263 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/251 (43%), Positives = 142/251 (56%), Gaps = 19/251 (7%) Query: 12 VYVGDSRVRRGSGFITPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXXXXXTISEPAPL 71 +VGDSRV P Y+ +PGK+E F PNFLLKEWM T+S P+PL Sbjct: 9 TFVGDSRVSAKRIPNISPAYSDFPGKNEPFWPNFLLKEWMVAAVCLVGFLVLTVSHPSPL 68 Query: 72 GFPANANAT-VIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFGSLLLAPFLDTG 130 AN N T IP+PDWYFLFLYQ LK P+A+GD++VLG + + G+AFG+L+LAP+LDT Sbjct: 69 TDKANPNDTSFIPLPDWYFLFLYQMLKYPWAAGDWVVLGIVVIPGIAFGALMLAPWLDTS 128 Query: 131 RERRFYRRPIASSLMFLSLIAIVYLTNTAWTEYKHEMAETGQIPEDVQREEKAAENKAKG 190 +ERR +RP+A+ LM +L+ + YLT A EY A +K KG Sbjct: 129 KERRPSKRPVATGLMLTALVGVFYLTWAANHEY-----------------HLAHPDKGKG 171 Query: 191 LPTTSAVQAKEIAIVDKDDPAMGLFK-QATCVTCHAVDMKGAGGPSLRGVGDTHDKEAIL 249 A A D A L+K Q +C+ CH +M+G GP+L+ +G T D I Sbjct: 172 TGGKEGSSATAPAPADTSFKADALWKAQTSCMGCHGKNMEGGMGPNLQKIGATLDAAKIT 231 Query: 250 AIIKNGQGQMP 260 IKNG+G MP Sbjct: 232 DTIKNGKGAMP 242 >Q81SU9.1 Q81SU9_BACAN Menaquinol-cytochrome c reductase, cytochrome b/c subunit Length = 255 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/275 (40%), Positives = 154/275 (56%), Gaps = 34/275 (12%) Query: 13 YVGDSRVRRGSGFITPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXXXXXTISEPAPLG 72 +VGDSRV P DY+ YPGK+EAF PNFLLKEWM T++ P+PL Sbjct: 9 FVGDSRVPVARKPNIPKDYSEYPGKTEAFWPNFLLKEWMVGAVFLIGYLCLTVAHPSPLE 68 Query: 73 FPAN-ANATVIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFGSLLLAPFLDTGR 131 A+ +A IP+PDWYFLFLYQ LK YASG + V+G + G+AFG+LLLAPFLD G Sbjct: 69 RMADPTDAGYIPLPDWYFLFLYQLLKYSYASGSFTVIGAFIMPGIAFGALLLAPFLDRGP 128 Query: 132 ERRFYRRPIASSLMFLSLIAIVYLTNTAWTEYKHEMAETGQIPEDVQREEKAAENKAKGL 191 ERR +RP+A+ M LS+ +I++LT W E V + A K + Sbjct: 129 ERRPLKRPVATGFMLLSVASIIFLT---W--------------ESVAHHDWEAAKKQGAI 171 Query: 192 PTTSAVQAKEIAIVDKDDPAMGLFKQATCVTCHAVDMK-GAGGPSLRGVGDTHDKEAILA 250 T A VDK+D L ++ TC+TCH +++ GA P+L+ + T E I Sbjct: 172 VKT--------APVDKNDDGYKLMQKNTCLTCHGDNLQGGAAAPALQNL--TLKPEEIAK 221 Query: 251 IIKNGQGQMPPMHDTAIAAGLSEQDIDSLAAWLAK 285 I K+G+G MP I G +++++ L+ ++AK Sbjct: 222 IAKDGKGAMP----KGIFKG-TDEELKKLSEFIAK 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,749,876,582 Number of extensions: 70726465 Number of successful extensions: 316095 Number of sequences better than 1.0e-05: 200 Number of HSP's gapped: 318134 Number of HSP's successfully gapped: 200 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)