BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0010.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKU7.1 B3KKU7_9BACI Putative uncharacterized protein 190 7e-47 B1DM14.1 B1DM14_9BACL Putative uncharacterized protein 177 5e-43 C0ZCG0.1 C0ZCG0_BREBN Conserved hypothetical membrane protein 142 2e-32 Q9KC98.1 Q9KC98_BACHD BH1675 protein 132 2e-29 Q5KXW2.1 Q5KXW2_GEOKA Hypothetical conserved protein 127 5e-28 >B3KKU7.1 B3KKU7_9BACI Putative uncharacterized protein Length = 210 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 98/184 (53%), Positives = 121/184 (65%), Gaps = 1/184 (0%) Query: 1 MWLLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPK 60 +WLL + N LGTIYGYIWYG Q+ T + +W + FVPDSP YPP+ Sbjct: 18 LWLLLVCNVLGTIYGYIWYGAQMADTVEHGYIWQVVFVPDSPTASLFFSLALLLLLYPPR 77 Query: 61 GIKGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALI 120 + G L ++ IEALAVVTSVKYGIWAV +IFAG QGD ++W+DWMLV SHT MAVEAL+ Sbjct: 78 SLGGALFQQFIEALAVVTSVKYGIWAVVMIFAGQAQGDVLAWQDWMLVASHTAMAVEALL 137 Query: 121 YARFFSFR-RMLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFFSTAA 179 + R F +R L A+ W ND VDY+ GV+PWLP L D++ VQ FT LT FS A Sbjct: 138 FVRLFHYRWTALTGAIAWTLLNDTVDYTYGVFPWLPGPLYDDLPAVQLFTYLLTLFSGFA 197 Query: 180 AWLF 183 W+F Sbjct: 198 GWIF 201 >B1DM14.1 B1DM14_9BACL Putative uncharacterized protein Length = 212 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 95/196 (48%), Positives = 122/196 (62%), Gaps = 11/196 (5%) Query: 1 MWLLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPK 60 +W+LFI NFLGT+YGYIWYGNQ+E T N+P+W + FVPDSP +PP+ Sbjct: 20 LWVLFIFNFLGTVYGYIWYGNQIEDTVSNHPLWQVVFVPDSPTASLFFTLTLLYWLFPPQ 79 Query: 61 G----IKGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAV 116 G + G R +IE LAVVTS+KYGIWAVS+I AG QGD + W+ WML+ SHT MAV Sbjct: 80 GNSRFVNGA--RMIIEGLAVVTSIKYGIWAVSMIVAGSMQGDPLQWEHWMLMASHTAMAV 137 Query: 117 EALIYARFFSFRRMLP-LALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFF 175 E L+YARF + W ND VDY+ V+PWL D L D++ V++FT LT F Sbjct: 138 EVLLYARFMKAGIWAAVIGTLWLLLNDTVDYAYDVFPWLSDRLMDDLTAVKWFTYSLTIF 197 Query: 176 STAAAWLFGGRSRRTE 191 S ++ GG + R Sbjct: 198 S----FIVGGLALRAR 209 >C0ZCG0.1 C0ZCG0_BREBN Conserved hypothetical membrane protein Length = 199 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 110/185 (59%), Gaps = 18/185 (9%) Query: 1 MWLLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPK 60 +W LF+VNFLGTIYG+IWYGNQL T P +L+PFVPDSP Sbjct: 18 LWTLFVVNFLGTIYGFIWYGNQLAVT----PAYLIPFVPDSPTGSGLFSLVL-------- 65 Query: 61 GIKGTLVREL--IEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEA 118 + L R + +EALA +T+ KYG+WAV II AG G+ V D ML+VSHTGMAVE+ Sbjct: 66 -LTYLLGRHIPVLEALAGITNFKYGVWAVCIIVAGWLMGNEVRVTDLMLIVSHTGMAVES 124 Query: 119 LIYARFFSFRRMLP--LALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFFS 176 ++YARF+ +LP +A W ND +DY ++PWLP VL+ V FT+ L+ S Sbjct: 125 VLYARFYKL-SLLPVGIAALWTLNNDFLDYVMDIHPWLPSVLDPYEGFVGLFTVLLSLIS 183 Query: 177 TAAAW 181 + W Sbjct: 184 ISVIW 188 >Q9KC98.1 Q9KC98_BACHD BH1675 protein Length = 202 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 13/193 (6%) Query: 1 MWLLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPK 60 +W L ++NFLGTIYGYIWY +QL T P L FVPDSP Sbjct: 17 LWALLVINFLGTIYGYIWYADQLAQT----PAHFLIFVPDSPTASLFFVFVLIAFLQRKN 72 Query: 61 GIKGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALI 120 L EA A VT +KYGIWAV++I AG GDT++W+ +ML+ SH GMA++A + Sbjct: 73 W-------SLFEAFAAVTLIKYGIWAVAMILAGAAAGDTLNWQHYMLIFSHGGMAIQAYL 125 Query: 121 YARFFSFRR-MLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVN-EVQYFTIGLTFFSTA 178 Y ++ R L + W ND +DY+ ++PW+ L D V E+ FT+GL+ FS Sbjct: 126 YMSYYRIRLWHLLVVSSWTLLNDYIDYAHLMHPWVSRRLNDYVIPEIAMFTVGLSLFSIL 185 Query: 179 AAWLFGGRSRRTE 191 + + R + + Sbjct: 186 SVYFLSVRGKAAK 198 >Q5KXW2.1 Q5KXW2_GEOKA Hypothetical conserved protein Length = 206 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 104/194 (53%), Gaps = 14/194 (7%) Query: 1 MWLLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPK 60 +WLL VN GTIYGY WY QL T P LPFVPDSP + Sbjct: 14 VWLLLFVNAAGTIYGYYWYRYQLADT----PPIFLPFVPDSPTASLFFLVVLVAWLFGRS 69 Query: 61 GIKGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALI 120 L EALA+VT VKYGIWAV + T+ W WML+VSH MA+E ++ Sbjct: 70 A-------PLFEALALVTLVKYGIWAVVMNVLVWRVTGTLDWAGWMLIVSHGAMAIEGML 122 Query: 121 YARFFSFRRM-LPLALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFFSTAA 179 YARF+ FR + L LA W ND++DY G+ P VL D NE+ YFT L+ S AA Sbjct: 123 YARFYRFRFLHLMLAAVWTLHNDVIDYVFGMMP-RYSVLADYANEIGYFTFWLSIASIAA 181 Query: 180 AWLFGGRSRRTEPL 193 A+ G R RR +PL Sbjct: 182 AYQLGVRLRR-QPL 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,241,281,547 Number of extensions: 45463956 Number of successful extensions: 172169 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 171831 Number of HSP's successfully gapped: 148 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)