BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0007.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKU9.1 B3KKU9_9BACI Putative uncharacterized protein 387 e-106 B1DM12.1 B1DM12_9BACL Putative uncharacterized protein 272 3e-71 C5D3C1.1 C5D3C1_9BACI Putative uncharacterized protein 261 4e-68 B7GHS2.1 B7GHS2_ANOFW Uncharacterized membrane protein 261 7e-68 A4IQ69.1 A4IQ69_GEOTN Hypothetical membrane spanning protein 259 3e-67 >B3KKU9.1 B3KKU9_9BACI Putative uncharacterized protein Length = 289 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/279 (70%), Positives = 235/279 (84%) Query: 12 VKTAAPIMLGAAVYAFGLLYFIIPNQLMEGGVTGITILLNYAFXXXXXXXXXXXXXXXXX 71 ++T PI+ G+A+YAFGLLYFIIPN+LMEGGVTGIT+LLNYAF Sbjct: 10 LQTIIPIIAGSAIYAFGLLYFIIPNELMEGGVTGITVLLNYAFNISPSISTMALNIPLFL 69 Query: 72 XGWKVLGGRQIAYTGVGIGALSLFLWLFERMIDAGWIVTFSTEHDFILASLYAGVTLGLG 131 G K+LG RQ YTG+GI +L+LFLWLFE +ID G++V F TEHD+ILA+LYAGVTLG G Sbjct: 70 VGMKILGKRQSVYTGLGIASLTLFLWLFELLIDRGYVVPFHTEHDYILAALYAGVTLGAG 129 Query: 132 LGIVFRFGGTTGGVDIVARILGRKFGWSMGQIILAVDVIIIGASLLYIPREKILYTLVAV 191 LGIVFRFGGTTGG DI+ARI+ RKFG+SMGQIIL++D++IIG SL +IP E+ILYTLVAV Sbjct: 130 LGIVFRFGGTTGGSDIIARIINRKFGFSMGQIILSLDILIIGLSLFFIPLERILYTLVAV 189 Query: 192 FISSRVIDFIQEGAYAAKAFTIISDDAPQIADLITAEMDRGVTLIPAIGAYSKQAKYMVY 251 FI+S+VIDFIQEGAYAAKAFTIISD AP IA+ I+ EMDRGVTLIPAIGAYS QAK+MVY Sbjct: 190 FIASKVIDFIQEGAYAAKAFTIISDRAPDIANRISTEMDRGVTLIPAIGAYSMQAKHMVY 249 Query: 252 CVVSRQEIRRLSQLVKSVDAKAFVIISDVHDVHGEGFRQ 290 CVVSRQEIRRL+ + KS+D +AF+II+DV+DVHGEGF++ Sbjct: 250 CVVSRQEIRRLTGIAKSLDPRAFIIINDVNDVHGEGFKE 288 >B1DM12.1 B1DM12_9BACL Putative uncharacterized protein Length = 259 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/248 (57%), Positives = 180/248 (72%), Gaps = 2/248 (0%) Query: 12 VKTAAPIMLGAAVYAFGLLYFIIPNQLMEGGVTGITILLNYAFXXXXXXXXXXXXXXXXX 71 ++T PI++G AVYAFGL YF+IPNQLMEGGVTGI +LLNYA Sbjct: 9 LQTVLPILVGTAVYAFGLHYFVIPNQLMEGGVTGIGVLLNYAAGIPLSLSTLILNIPLFL 68 Query: 72 XGWKVLGGRQIAYTGVGIGALSLFLWLFERMIDAGWIVTFSTEHDFILASLYAGVTLGLG 131 GW+ LG ++AYT VG+ +LS FL L E MID GWIVTF HD++LA+LYAGVTLG G Sbjct: 69 IGWRKLGLGEMAYTLVGVVSLSGFLALMEWMIDKGWIVTFHNSHDYLLAALYAGVTLGGG 128 Query: 132 LGIVFRFGGTTGGVDIVARILGRKFGWSMGQIILAVDVIIIGASLLYIPREKILYTLVAV 191 LGIVFR GGTTGGVDI+ARI R+ +SMGQ IL D +IIG SLL+IP EK+LYTLV V Sbjct: 129 LGIVFRAGGTTGGVDIIARIASRRKAFSMGQFILISDAVIIGISLLFIPIEKVLYTLVTV 188 Query: 192 FISSRVIDFIQEGAYAAKAFTIISDDAPQIADLITAEMDRGVTLIPAIGAYSKQAK--YM 249 F++S++IDFIQ+GAYAAK+F+II++ ++A IT E+DRGVTL+PA G + + K + Sbjct: 189 FVASKLIDFIQDGAYAAKSFSIITEQGKEMAAQITTELDRGVTLMPARGXFFRTIKRGRL 248 Query: 250 VYCVVSRQ 257 + C +R Sbjct: 249 LRCSAARN 256 >C5D3C1.1 C5D3C1_9BACI Putative uncharacterized protein Length = 289 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 134/277 (48%), Positives = 187/277 (67%), Gaps = 5/277 (1%) Query: 12 VKTAAPIMLGAAVYAFGLLYFIIPNQLMEGGVTGITILLNYAFXXXXXXXXXXXXXXXXX 71 +K I+LGAA++AFGL++F + N L EGG TGIT+LL + F Sbjct: 7 IKNIIFILLGAAIFAFGLVHFNMQNNLAEGGFTGITLLLYFLFDMDPSITNLALNVPLFF 66 Query: 72 XGWKVLGGRQIAYTGVGIGALSLFLWLFERMIDAGWIVTFSTEHDFILASLYAGVTLGLG 131 GWK+LG YT +G LSLFLW+F+R + + +HD LA+L+AGV +G+G Sbjct: 67 IGWKLLGRNSFLYTIIGTVGLSLFLWIFQR-----YAIHMPLKHDMTLAALFAGVFIGVG 121 Query: 132 LGIVFRFGGTTGGVDIVARILGRKFGWSMGQIILAVDVIIIGASLLYIPREKILYTLVAV 191 LGI+FR+GGTTGGVDI+AR++ + G SMG+ + D +I SLLY+ + +YTLVAV Sbjct: 122 LGIIFRYGGTTGGVDIIARLVHKYKGISMGKTMFTFDAAVITLSLLYLSYREAMYTLVAV 181 Query: 192 FISSRVIDFIQEGAYAAKAFTIISDDAPQIADLITAEMDRGVTLIPAIGAYSKQAKYMVY 251 FI++RVIDF+QEG YAAK TIIS+ + +IA I EMDRGVT++ G+Y+K+ + ++Y Sbjct: 182 FIAARVIDFMQEGGYAAKGATIISEKSEEIASKILTEMDRGVTILKGRGSYTKRDRDVLY 241 Query: 252 CVVSRQEIRRLSQLVKSVDAKAFVIISDVHDVHGEGF 288 CVV++ E+ RL ++ SVD AFV ++DVHDV GEGF Sbjct: 242 CVVAKNELPRLKNVIISVDPHAFVAVTDVHDVLGEGF 278 >B7GHS2.1 B7GHS2_ANOFW Uncharacterized membrane protein Length = 289 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 137/278 (49%), Positives = 194/278 (69%), Gaps = 6/278 (2%) Query: 12 VKTAAPIMLGAAVYAFGLLYFIIPNQLMEGGVTGITILLNYAFXXXXXXXXXXXXXXXXX 71 +K A I+LG+A++AFGL++F + N+L EGG TGIT+LL + F Sbjct: 6 LKNVAFILLGSAIFAFGLVHFNMENKLAEGGFTGITLLLYFLFGIDPSISNLVLNIPLFF 65 Query: 72 XGWKVLGGRQIAYTGVGIGALSLFLWLFERMIDAGWIVTFSTEHDFILASLYAGVTLGLG 131 GWK+LG YT VG +LS+FLW+F+R G+ + + +D LA+L+AGV +G+G Sbjct: 66 IGWKLLGRTTFVYTIVGTVSLSIFLWIFQRY---GFHIPLN--NDLTLAALFAGVFIGVG 120 Query: 132 LGIVFRFGGTTGGVDIVARILGRKFGWSMGQIILAVDVIIIGASLL-YIPREKILYTLVA 190 LGI+FR+GGTTGGVDI+AR++ + G SMG+ + D +I SLL Y+P + +YTLVA Sbjct: 121 LGIIFRYGGTTGGVDIIARLVYKYKGISMGKTMFLFDSCVIVLSLLTYLPYREGMYTLVA 180 Query: 191 VFISSRVIDFIQEGAYAAKAFTIISDDAPQIADLITAEMDRGVTLIPAIGAYSKQAKYMV 250 VF+ +RVIDF+QEGAYAAK TIIS+ + I++ I EM+RGVT++ IG+Y+K+ + ++ Sbjct: 181 VFVGARVIDFLQEGAYAAKGATIISEKSDLISEKIMTEMERGVTILKGIGSYTKRERDVL 240 Query: 251 YCVVSRQEIRRLSQLVKSVDAKAFVIISDVHDVHGEGF 288 YCVV++ E+ RL ++ SVD AFV ISDVHDVHGEGF Sbjct: 241 YCVVAKNELSRLKSIITSVDPHAFVAISDVHDVHGEGF 278 >A4IQ69.1 A4IQ69_GEOTN Hypothetical membrane spanning protein Length = 343 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/277 (47%), Positives = 192/277 (69%), Gaps = 5/277 (1%) Query: 12 VKTAAPIMLGAAVYAFGLLYFIIPNQLMEGGVTGITILLNYAFXXXXXXXXXXXXXXXXX 71 +K + I+LGAA++AFGL++F + N L EGG TGIT+LL + F Sbjct: 61 MKNSLFILLGAAIFAFGLVHFNMQNNLAEGGFTGITLLLYFLFGLDPAITNLALNIPLFF 120 Query: 72 XGWKVLGGRQIAYTGVGIGALSLFLWLFERMIDAGWIVTFSTEHDFILASLYAGVTLGLG 131 GWK+LG + YT +G A+S+FL +F+R +++ +HD LA+L+AGV +G+G Sbjct: 121 IGWKLLGRQMFLYTVLGTVAVSMFLSIFQR-----YMIHMPLQHDMTLAALFAGVFIGVG 175 Query: 132 LGIVFRFGGTTGGVDIVARILGRKFGWSMGQIILAVDVIIIGASLLYIPREKILYTLVAV 191 LGI+FR+GGTTGGVDI+AR++ + G SMG+ + A D +I SLLY+ + +YTLVAV Sbjct: 176 LGIIFRYGGTTGGVDIIARLVYKYKGISMGKTMFAFDAAVITLSLLYLSYREAMYTLVAV 235 Query: 192 FISSRVIDFIQEGAYAAKAFTIISDDAPQIADLITAEMDRGVTLIPAIGAYSKQAKYMVY 251 F+++RVIDF+QEG YAAK TIIS+ + +IA+ I EM+RGVT++ G+Y+K+ + ++Y Sbjct: 236 FLAARVIDFMQEGGYAAKGATIISEKSEEIANRILTEMERGVTVLKGRGSYTKRDRDVLY 295 Query: 252 CVVSRQEIRRLSQLVKSVDAKAFVIISDVHDVHGEGF 288 CVV++ E+ RL ++ SVD AFV ++DVHDV GEGF Sbjct: 296 CVVAKNELPRLKNVIMSVDPHAFVAVTDVHDVLGEGF 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,506,872,848 Number of extensions: 60120161 Number of successful extensions: 238603 Number of sequences better than 1.0e-05: 1976 Number of HSP's gapped: 235460 Number of HSP's successfully gapped: 1976 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)