BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0006.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKV0.1 B3KKV0_9BACI MazG nucleotide pyrophosphohydrolase            199   9e-50
B1DM11.1 B1DM11_9BACL MazG nucleotide pyrophosphohydrolase            187   3e-46
C0ZCG3.1 C0ZCG3_BREBN Putative uncharacterized protein                169   8e-41
C3IH90.1 C3IH90_BACTU Putative uncharacterized protein                163   4e-39
C3HY68.1 C3HY68_BACTU Putative uncharacterized protein                163   4e-39

>B3KKV0.1 B3KKV0_9BACI MazG nucleotide pyrophosphohydrolase
          Length = 109

 Score =  199 bits (505), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/109 (84%), Positives = 101/109 (92%)

Query: 1   MDKSLGDIQREVDAYISQFKEGYFSPLSMLARMSEEVGELAREVNHQFGEKPKKVDEAEN 60
           M KS+ ++Q+EVD YISQFKEGYFSPLSM+ARMSEEVGELAREVNHQFGEKPKK DEAEN
Sbjct: 1   MGKSMAEMQQEVDRYISQFKEGYFSPLSMMARMSEEVGELAREVNHQFGEKPKKADEAEN 60

Query: 61  SIELELGDILFITVCFANSLGIDLTEAHNKVMHKFNTRDAGRWTPKNTD 109
           SIE+ELGDILFIT+CFANSLGIDL EAH+KVMHKF+TRDA RWT  NTD
Sbjct: 61  SIEMELGDILFITICFANSLGIDLAEAHDKVMHKFSTRDADRWTKINTD 109


>B1DM11.1 B1DM11_9BACL MazG nucleotide pyrophosphohydrolase
          Length = 111

 Score =  187 bits (475), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/106 (83%), Positives = 96/106 (90%)

Query: 2   DKSLGDIQREVDAYISQFKEGYFSPLSMLARMSEEVGELAREVNHQFGEKPKKVDEAENS 61
           +KSL DIQREVDAYI QFKEGYFSPL+++ARMSEEVGELAREVNH +GEKPKK +E ENS
Sbjct: 3   EKSLADIQREVDAYIGQFKEGYFSPLALMARMSEEVGELAREVNHYYGEKPKKPNEEENS 62

Query: 62  IELELGDILFITVCFANSLGIDLTEAHNKVMHKFNTRDAGRWTPKN 107
           IE+ELGDILFI  CFANSL IDLTEAHNKVM+KFNTRDA RWT KN
Sbjct: 63  IEMELGDILFILSCFANSLNIDLTEAHNKVMNKFNTRDANRWTRKN 108


>C0ZCG3.1 C0ZCG3_BREBN Putative uncharacterized protein
          Length = 115

 Score =  169 bits (428), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 90/102 (88%)

Query: 3   KSLGDIQREVDAYISQFKEGYFSPLSMLARMSEEVGELAREVNHQFGEKPKKVDEAENSI 62
           K++ ++Q+EVD YISQFKEGYFSPLSMLARM+EEVGELARE+NH +GEKPKK DE E ++
Sbjct: 5   KTMQEMQQEVDQYISQFKEGYFSPLSMLARMTEEVGELAREINHFYGEKPKKKDEGEKTV 64

Query: 63  ELELGDILFITVCFANSLGIDLTEAHNKVMHKFNTRDAGRWT 104
           E ELGD+LFI +CFANSLGIDL EA +++MHKFNTRD  RWT
Sbjct: 65  EEELGDVLFIVICFANSLGIDLQEAFDRIMHKFNTRDKDRWT 106


>C3IH90.1 C3IH90_BACTU Putative uncharacterized protein
          Length = 123

 Score =  163 bits (413), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 87/102 (85%)

Query: 3   KSLGDIQREVDAYISQFKEGYFSPLSMLARMSEEVGELAREVNHQFGEKPKKVDEAENSI 62
           K++ D+Q+EVDAYI QFKEGYFSPL+M+AR++EE+GELAREVNH +GEKPKK  E ENSI
Sbjct: 14  KTMKDMQKEVDAYIGQFKEGYFSPLAMMARLTEEMGELAREVNHYYGEKPKKTTEKENSI 73

Query: 63  ELELGDILFITVCFANSLGIDLTEAHNKVMHKFNTRDAGRWT 104
           E ELGD+LF+ +C ANSL IDL  AHN VM+KFNTRD  RWT
Sbjct: 74  EEELGDVLFVMICMANSLNIDLETAHNIVMNKFNTRDKDRWT 115


>C3HY68.1 C3HY68_BACTU Putative uncharacterized protein
          Length = 123

 Score =  163 bits (413), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 87/102 (85%)

Query: 3   KSLGDIQREVDAYISQFKEGYFSPLSMLARMSEEVGELAREVNHQFGEKPKKVDEAENSI 62
           K++ D+Q+EVDAYI QFKEGYFSPL+M+AR++EE+GELAREVNH +GEKPKK  E ENSI
Sbjct: 14  KTMKDMQKEVDAYIGQFKEGYFSPLAMMARLTEEMGELAREVNHYYGEKPKKTTEKENSI 73

Query: 63  ELELGDILFITVCFANSLGIDLTEAHNKVMHKFNTRDAGRWT 104
           E ELGD+LF+ +C ANSL IDL  AHN VM+KFNTRD  RWT
Sbjct: 74  EEELGDVLFVMICMANSLNIDLETAHNIVMNKFNTRDKDRWT 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 625,156,924
Number of extensions: 22194473
Number of successful extensions: 75562
Number of sequences better than 1.0e-05: 232
Number of HSP's gapped: 75544
Number of HSP's successfully gapped: 232
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)