BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0005.p (173 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKV1.1 B3KKV1_9BACI Tetratricopeptide TPR_2 repeat protein 137 4e-31 B1DM10.1 B1DM10_9BACL Tetratricopeptide TPR_2 repeat protein 106 8e-22 A9KCR4.1 A9KCR4_COXBN Tetratricopeptide repeat family protein 69 2e-10 Q83DZ1.1 Q83DZ1_COXBU Tetratricopeptide repeat family protein 66 1e-09 A9NC38.1 A9NC38_COXBR Tetratricopeptide repeat protein/methyltra... 66 1e-09 >B3KKV1.1 B3KKV1_9BACI Tetratricopeptide TPR_2 repeat protein Length = 147 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/133 (52%), Positives = 92/133 (69%), Gaps = 3/133 (2%) Query: 1 MDHNDYIKAAYRSILRSDFAEAITLFEKAIAASPDDAEVRYRCSITYARSGMLVKALEHV 60 M YI+ AYR IL++DF EA+ FE+AI A+P DAEV YRCSITY RS L A+ H Sbjct: 1 MKPESYIQKAYRCILQNDFEEALRWFEQAIIANPGDAEVHYRCSITYGRSNKLEMAITHA 60 Query: 61 RAAVKLDGEKPEYRLHLQHLQALQFVQEAKKLLED--EVTETHNPYHPVTLLKEAIALDP 118 AV+L +KPEY LHLQH++A + VQ A+K++E+ +VT+ Y V LK A+A+DP Sbjct: 61 EEAVRLQPDKPEYALHLQHIKAAELVQRARKMVENRKDVTKA-ELYQAVGHLKSAVAMDP 119 Query: 119 LYGDAYVWLAIAH 131 LY AYVWLA+ + Sbjct: 120 LYAQAYVWLALVY 132 >B1DM10.1 B1DM10_9BACL Tetratricopeptide TPR_2 repeat protein Length = 180 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 3/166 (1%) Query: 1 MDHNDYIKAAYRSILRSDFAEAITLFEKAIAASPDDAEVRYRCSITYARSGMLVKALEHV 60 MD +K AY IL SDF +AI FE+AIAA P +A ++ C+++ ARSG KA ++ Sbjct: 1 MDGESCVKKAYEFILNSDFEQAIYWFEQAIAAEPLNAGYQHICAVSCARSGKWTKAHQYA 60 Query: 61 RAAVKLDGEKPEYRLHLQHLQALQFVQEAKKLLEDEVTETHNPYHPVTLLKEAIALDPLY 120 + AV+LDG PEY+ HLQ +++ V A++ L +E ++ + + LL++A LDPL Sbjct: 61 KQAVELDGNHPEYQYHLQTIESRLLVAAAEQKLAEEPSQYTD---AIPLLQQAADLDPLS 117 Query: 121 GDAYVWLAIAHSRMNEHVQAIAALKEVMSLHPDDNGLRQLMKDLQK 166 +A+ LA+ +S M ++ +E + L P + R+L D+ + Sbjct: 118 FEAFYLLALTYSEMGRLEESAINAREAIRLDPGHSAARRLFADVNR 163 >A9KCR4.1 A9KCR4_COXBN Tetratricopeptide repeat family protein Length = 561 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 17/167 (10%) Query: 17 SDFAEAITLFEKAIAASPDDAEVRYRCSITYARSGMLVKALEHVRAAVKLDGEKPE--YR 74 DF++AIT +EK +A P++A+ +Y C + + + KA++H A+ L+ E P+ Y Sbjct: 186 GDFSKAITYYEKRLALEPENADAQYDCGLAHLKDNQFQKAIDHFTNALLLNPEHPDCHYS 245 Query: 75 LHLQHLQA-------LQFVQEAKKLLEDEVTETHNPYH--------PVTLLKEAIALDPL 119 L +LQ L ++++ +K + E H + K+A+ LDP Sbjct: 246 LATAYLQRGDHKEALLHYLRQLEKKPQIECYYNVGVLHMYQERHREAIDYFKQALTLDPN 305 Query: 120 YGDAYVWLAIAHSRMNEHVQAIAALKEVMSLHPDDNGLRQLMKDLQK 166 Y +A++ +A + ++N+ QAI + + L P+D+ + ++ LQK Sbjct: 306 YREAHLNIAAVYLKINQIKQAIEHYESTLVLKPNDSEIEHILTALQK 352 >Q83DZ1.1 Q83DZ1_COXBU Tetratricopeptide repeat family protein Length = 561 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 17/167 (10%) Query: 17 SDFAEAITLFEKAIAASPDDAEVRYRCSITYARSGMLVKALEHVRAAVKLDGEKPE--YR 74 DF++AIT +EK +A P++A+ +Y C + + + KA+++ A+ L+ E P+ Y Sbjct: 186 GDFSKAITYYEKRLALEPENADAQYDCGLAHLKDNQFQKAIDYFTNALLLNPEHPDCHYS 245 Query: 75 LHLQHLQA-------LQFVQEAKKLLEDEVTETHNPYH--------PVTLLKEAIALDPL 119 L +LQ L ++++ +K + E H + K+A+ LDP Sbjct: 246 LATAYLQRGDHKEALLHYLRQLEKKPQIECYYNVGVLHMYQERHREAIDYFKQALTLDPN 305 Query: 120 YGDAYVWLAIAHSRMNEHVQAIAALKEVMSLHPDDNGLRQLMKDLQK 166 Y +A++ +A + ++N+ QAI + + L P+D+ + ++ LQK Sbjct: 306 YREAHLNIAAVYLKINQIKQAIEHYESTLVLKPNDSEIEHILTALQK 352 >A9NC38.1 A9NC38_COXBR Tetratricopeptide repeat protein/methyltransferase Length = 561 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 17/167 (10%) Query: 17 SDFAEAITLFEKAIAASPDDAEVRYRCSITYARSGMLVKALEHVRAAVKLDGEKPE--YR 74 DF++AIT +EK +A P++A+ +Y C + + + KA+++ A+ L+ E P+ Y Sbjct: 186 GDFSKAITYYEKRLALEPENADAQYDCGLAHLKDNQFQKAIDYFTNALLLNPEHPDCHYS 245 Query: 75 LHLQHLQA-------LQFVQEAKKLLEDEVTETHNPYH--------PVTLLKEAIALDPL 119 L +LQ L ++++ +K + E H + K+A+ LDP Sbjct: 246 LATAYLQRGDHKEALLHYLRQLEKKPQIECYYNVGVLHMYQERHREAIDYFKQALTLDPN 305 Query: 120 YGDAYVWLAIAHSRMNEHVQAIAALKEVMSLHPDDNGLRQLMKDLQK 166 Y +A++ +A + ++N+ QAI + + L P+D+ + ++ LQK Sbjct: 306 YREAHLNIAAVYLKINQIKQAIEHYESTLVLKPNDSEIEHILTALQK 352 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 967,566,771 Number of extensions: 35036659 Number of successful extensions: 135942 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 136345 Number of HSP's successfully gapped: 20 Length of query: 173 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 47 Effective length of database: 1,873,648,313 Effective search space: 88061470711 Effective search space used: 88061470711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)