BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0004.p (267 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKV2.1 B3KKV2_9BACI Dihydrodipicolinate reductase EC=1.3.1.26 436 e-121 B1DM09.1 B1DM09_9BACL Dihydrodipicolinate reductase EC=1.3.1.26 400 e-110 B0THS7.1 B0THS7_HELMI Dihydrodipicolinate reductase 300 1e-79 B7GHS4.1 B7GHS4_ANOFW Dihydrodipicolinate reductase 293 9e-78 C3IYW1.1 C3IYW1_9BACI Dihydrodipicolinate reductase EC=1.3.1.26 293 9e-78 >B3KKV2.1 B3KKV2_9BACI Dihydrodipicolinate reductase EC=1.3.1.26 Length = 267 Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/264 (79%), Positives = 232/264 (87%) Query: 4 KIRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSSGSDAGRLVGLEESGIVVVSDLE 63 K V V GAGGRMGKEVVKLVL DEELEL AAV S +G+DAG LVGL GI V SDLE Sbjct: 4 KWTVAVVGAGGRMGKEVVKLVLGDEELELVAAVGLSDAGADAGTLVGLPACGITVTSDLE 63 Query: 64 TALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGIGG 123 AL ES +V+VDFT PQ AY NT LAIK+GVRP++GTTGF+PEQI ELDKQC E+ IGG Sbjct: 64 MALVESKPDVMVDFTAPQFAYSNTALAIKHGVRPIMGTTGFTPEQIEELDKQCTEQNIGG 123 Query: 124 LIAPNFSIGAILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISEVRQELR 183 LIAPNFSIGAILMMKFAAQAAKY PH+EIIE HGDQKLDAPSGT+IKTAEMI+ R+E+R Sbjct: 124 LIAPNFSIGAILMMKFAAQAAKYLPHVEIIETHGDQKLDAPSGTSIKTAEMIAANREEIR 183 Query: 184 QGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSYERAGYMP 243 QGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQ+EV+FGGYGQSLKIRHDSYERA YMP Sbjct: 184 QGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQQEVIFGGYGQSLKIRHDSYERAAYMP 243 Query: 244 GVKMGVQKVMGYTGLIYGFEHFIE 267 GVKM ++KVMGYTGL+YGF+HFI+ Sbjct: 244 GVKMAIEKVMGYTGLVYGFDHFID 267 >B1DM09.1 B1DM09_9BACL Dihydrodipicolinate reductase EC=1.3.1.26 Length = 268 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/263 (72%), Positives = 226/263 (85%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSSGSDAGRLVGLEESGIVVVSDLET 64 I+V V GA GRMG+EVVK+VL+DE LEL AAV S+ DAG G +G+ V + +E Sbjct: 6 IKVAVIGASGRMGREVVKMVLEDEALELVAAVAPSAGPVDAGVFAGKANTGVTVSATIEE 65 Query: 65 ALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGIGGL 124 AL+ +V+VDFT P AY +T +AI++GVRP++GTTGF+PEQI ELDK C+E+GIGGL Sbjct: 66 ALSHVKADVMVDFTVPALAYQHTKVAIEHGVRPIMGTTGFTPEQIEELDKLCQEKGIGGL 125 Query: 125 IAPNFSIGAILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISEVRQELRQ 184 IAPNFSIGAILMMKFAA+A+KY PH+EIIEYHGDQKLDAPSGT+IKTAE+IS+VRQELRQ Sbjct: 126 IAPNFSIGAILMMKFAAEASKYMPHVEIIEYHGDQKLDAPSGTSIKTAELISQVRQELRQ 185 Query: 185 GNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSYERAGYMPG 244 GNP EEEVIEG+RGGYYNGFRIHSVRLPGVFAQ+EVVFGGYGQ+LKIRHDSY+RAGYMPG Sbjct: 186 GNPNEEEVIEGSRGGYYNGFRIHSVRLPGVFAQQEVVFGGYGQTLKIRHDSYDRAGYMPG 245 Query: 245 VKMGVQKVMGYTGLIYGFEHFIE 267 V + V+KVM Y+GLIYGFEH ++ Sbjct: 246 VNVAVKKVMDYSGLIYGFEHLMD 268 >B0THS7.1 B0THS7_HELMI Dihydrodipicolinate reductase Length = 267 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 143/263 (54%), Positives = 191/263 (72%) Query: 4 KIRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSSGSDAGRLVGLEESGIVVVSDLE 63 +IRV+VSGA G++G+EV+K VL D LEL AAVD + G DA L GL G+++ DL Sbjct: 4 RIRVLVSGARGKVGREVIKAVLGDNTLELVAAVDHNGVGEDAAVLAGLPACGVLIQGDLA 63 Query: 64 TALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGIGG 123 A+ E+ +V+VDFT+P S N +A+ GV PV+GTTG S + E+ + + +G Sbjct: 64 AAITETQPQVMVDFTSPASVMENVRIALMAGVAPVVGTTGLSARDMEEIAEWAAAKEVGC 123 Query: 124 LIAPNFSIGAILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISEVRQELR 183 LIAPNF+IGA+LMM+FA +AA++FP++EIIEYH DQKLDAPSGTAIKTAE+I E R+ +R Sbjct: 124 LIAPNFAIGALLMMRFAREAARFFPNVEIIEYHHDQKLDAPSGTAIKTAELIREERRAIR 183 Query: 184 QGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSYERAGYMP 243 QG+P+EEE I G+RGG ++G RIHSVRLPG+ A +EV+FG GQ+L IRHDS R +MP Sbjct: 184 QGHPEEEEKITGSRGGEFDGMRIHSVRLPGLVAHQEVIFGALGQTLSIRHDSISRESFMP 243 Query: 244 GVKMGVQKVMGYTGLIYGFEHFI 266 GV + ++ Y GLIYG + I Sbjct: 244 GVLEAIHRIGAYKGLIYGLDKII 266 >B7GHS4.1 B7GHS4_ANOFW Dihydrodipicolinate reductase Length = 272 Score = 293 bits (751), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 140/263 (53%), Positives = 182/263 (69%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSSGSDAGRLVGLEESGIVVVSDLET 64 IR++++G GRMG+E V LV + + EL A VDR + G L G + +DLE Sbjct: 10 IRIVIAGPRGRMGREAVSLVHETKHFELVAVVDRMNEGKTLAELDGFPAIEAPIFTDLER 69 Query: 65 ALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGIGGL 124 L +VL+D TTP+ +T +A+ YGVRPV+GTTGF+ + + L + E+ IG + Sbjct: 70 CLQTVQADVLIDLTTPEVGKRHTEIALHYGVRPVVGTTGFTEDDLVRLTQIAEEKKIGAI 129 Query: 125 IAPNFSIGAILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISEVRQELRQ 184 IAPNF+IGAILMMKFA AAKYFPH+EIIE H DQKLDAPSGTA+KTA++I +VR Q Sbjct: 130 IAPNFAIGAILMMKFAQMAAKYFPHVEIIELHHDQKLDAPSGTALKTAQLIQQVRPSFTQ 189 Query: 185 GNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSYERAGYMPG 244 G+ E+E +EGARG Y+G RIHSVRLPG+ A +EV+FGG GQ+L IRHDS+ RA +M G Sbjct: 190 GHEAEKETMEGARGALYDGMRIHSVRLPGLVAHQEVIFGGDGQTLTIRHDSFNRASFMSG 249 Query: 245 VKMGVQKVMGYTGLIYGFEHFIE 267 V+ V+ VM L+YG EH IE Sbjct: 250 VRFSVETVMKLETLVYGLEHLIE 272 >C3IYW1.1 C3IYW1_9BACI Dihydrodipicolinate reductase EC=1.3.1.26 Length = 265 Score = 293 bits (751), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 139/263 (52%), Positives = 184/263 (69%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSSGSDAGRLVGLEESGIVVVSDLET 64 IR++++G GRMG+E V LV Q + ELAA +DR G + + G + +D Sbjct: 3 IRIVIAGPRGRMGREAVALVQQTDHFELAAVIDRRYDGQNLAEIDGFSGVNAPIYTDAAR 62 Query: 65 ALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGIGGL 124 AE +VL+D TTP++ +T LA++YGVRPV+GTTGF+PE I L K E+ IG + Sbjct: 63 CFAEVKPDVLIDLTTPEAGKRHTELALRYGVRPVVGTTGFTPEDIERLTKLAEEKEIGAI 122 Query: 125 IAPNFSIGAILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISEVRQELRQ 184 IAPNF++GA+LMMKFA AAKYF +EIIE H DQKLDAPSGTA+KTA++I+EVR +Q Sbjct: 123 IAPNFAVGAVLMMKFARMAAKYFTDVEIIELHHDQKLDAPSGTALKTAQLIAEVRPSKKQ 182 Query: 185 GNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSYERAGYMPG 244 G+P E+E + GARG Y+G IHSVRLPG A +EV+FGG GQ+L IRHDS++R +M G Sbjct: 183 GHPNEKETLAGARGAEYDGIPIHSVRLPGFVAHQEVIFGGNGQTLTIRHDSFDRRSFMSG 242 Query: 245 VKMGVQKVMGYTGLIYGFEHFIE 267 VK+ V+ VM L+YG EH +E Sbjct: 243 VKLAVETVMHLHTLVYGLEHILE 265 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,636,516,719 Number of extensions: 69914928 Number of successful extensions: 200531 Number of sequences better than 1.0e-05: 1417 Number of HSP's gapped: 197304 Number of HSP's successfully gapped: 1419 Length of query: 267 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 134 Effective length of database: 1,807,701,208 Effective search space: 242231961872 Effective search space used: 242231961872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)