BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0001.p (433 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7Y240.1 B7Y240_RUMHA 3-phosphoshikimate 1-carboxyvinyltransfera... 324 1e-86 B0MIQ6.1 B0MIQ6_9FIRM 3-phosphoshikimate 1-carboxyvinyltransfera... 319 4e-85 B0NXH5.1 B0NXH5_9CLOT 3-phosphoshikimate 1-carboxyvinyltransfera... 317 2e-84 A8RMM9.1 A8RMM9_9CLOT 3-phosphoshikimate 1-carboxyvinyltransfera... 315 6e-84 A5ZQ78.1 A5ZQ78_9FIRM 3-phosphoshikimate 1-carboxyvinyltransfera... 308 7e-82 >B7Y240.1 B7Y240_RUMHA 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 426 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 178/419 (42%), Positives = 261/419 (62%), Gaps = 9/419 (2%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 +VPGDKSIS RA++L A+A+G +V N L+ D S I+ ++G+ I E+ +HG+ Sbjct: 14 AVPGDKSISHRAVMLGALAKGTTSVTNFLKGADCLSTISCFEKMGIEIEQLPSEILIHGK 73 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GL GL AP L+ GN+ T+ RL+ +LAGQ+F L G+A + RPM ++ PL+ MG Sbjct: 74 GLHGLNAPETILDAGNSGTTTRLLSGILAGQAFCTTLTGDASIQKRPMTRIITPLSQMGG 133 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 IE L GC PL+I G PL PI + V SAQ KS +L AG+YA+GIT+ + SR+ Sbjct: 134 KIESLSDNGCAPLKITG-HPLKPIHYLSPVSSAQVKSCVLLAGMYADGITKVTEPYLSRN 192 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGS- 246 H+E ++ FG D+ S+ + G ++V+VPGD+SSAA+ +AA G+ GS Sbjct: 193 HSELMLRSFGADVISEGTTAAITGNPVLEGQNVIVPGDISSAAYFIAA----GLLIPGSE 248 Query: 247 LLIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNG 306 +LIK VG+NPTR G +++ A+MG + L + E EPVADI + L + + EG Sbjct: 249 ILIKDVGINPTRDGILKVCADMGADIQLLNKREY-GKEPVADILVK-HSELKATVIEG-A 305 Query: 307 RIQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEM 366 I +LIDE+P+LA ++AFA+G TVIRD EL+ K++NR+ L A G + ++D M Sbjct: 306 LIPTLIDELPMLAVMAAFAQGTTVIRDAQELKVKESNRLDIIVQHLSAMGADIIPTEDGM 365 Query: 367 VIHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQFA 425 IHGG+PL A+++S DHRIAM+ AV + D + I N C+++SYP F D++ + Sbjct: 366 EIHGGKPLKGAVLDSYMDHRIAMSFAVAGMAADGETEILNASCVDISYPEFYRDMAAIS 424 >B0MIQ6.1 B0MIQ6_9FIRM 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 426 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 176/418 (42%), Positives = 252/418 (60%), Gaps = 7/418 (1%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 S+PGDKSIS RA++ ++A+G + N L D + I R +GVRI G ++VHG Sbjct: 14 SIPGDKSISHRAVMFGSLAKGTTHITNFLSGADCLATIDCFRAMGVRIEQEGTVVTVHGN 73 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GLRGL+ P +L+VGN+ T+ RL+ +L+GQ F L G+A L+ RPM +++PL+ MGA Sbjct: 74 GLRGLKKPEKQLDVGNSGTTTRLISGILSGQDFEVTLSGDASLNKRPMGRIMKPLSMMGA 133 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 IE + GC PL+I G PL + E+ V SAQ KSA+L AGLYA+G T + SR+ Sbjct: 134 EIESVNGDGCAPLKITG-KPLKAVRYESPVASAQVKSAVLLAGLYADGRTSVTEPALSRN 192 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGSL 247 HTE ++ FG+ + S+ + A D+ VPGD+SSAAF +AA V + Sbjct: 193 HTELMLKSFGVQVLSEGTTASVMPPKEMTATDIAVPGDISSAAFFIAAGL---VTPDSCI 249 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 +KQVG+NPTR+G I++ MG LT+ + + +GEP ADI +RL G Sbjct: 250 TLKQVGINPTRNGIIKVCEAMGADLTM-SNVKDDNGEPTADITVKT-SRLKGTEIGGE-L 306 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I +LIDE+P++A ++AFAEG TVI++ EL+ K++NRI T L G + +DD M+ Sbjct: 307 IPTLIDEIPVIALMAAFAEGETVIKNAAELKVKESNRIDLTVDNLVKMGADAEATDDGMI 366 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQFA 425 I GG PL A ++ DHRIAMT +V + ++I + C++VSYP F E L A Sbjct: 367 IRGGNPLRGATIHCKYDHRIAMTFSVAGINAQGTTVIEDAECVDVSYPNFYEQLQMLA 424 >B0NXH5.1 B0NXH5_9CLOT 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 424 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 170/417 (40%), Positives = 251/417 (60%), Gaps = 7/417 (1%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 S+PGDKSIS RA++ ++A+G + N L D S I R++GV I NG ++VHG Sbjct: 14 SIPGDKSISHRAVMFGSLAKGTTHISNFLSGADCLSTIDCFRKMGVLIEQNGTNVTVHGN 73 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GL GL+AP+ L+VGN+ T+ RL+ +LAGQ F L G+A L+ RPM +++PL MGA Sbjct: 74 GLHGLKAPSETLDVGNSGTTTRLISGILAGQDFETVLSGDASLNKRPMGRIIKPLEQMGA 133 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 I + GC PL+I+G + L+ ++ V SAQ KS +L AGLYA+G T + SR+ Sbjct: 134 KITSVNGNGCAPLKIEG-TKLNATHYDSPVASAQVKSCVLLAGLYADGKTSVTEPALSRN 192 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGSL 247 HTE ++ FG+ + S + + A D++VPGD+SSA F + A I + Sbjct: 193 HTELMLRSFGVKVESHDTTATITPPEEMIATDIVVPGDISSATFFIVAGLIT---PNSCI 249 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 +K VG+NPTR G +R+ +MG +TL+ + GEP ADI +V+ G Sbjct: 250 RLKNVGINPTRDGILRVCKDMGADVTLENVIDN-GGEPTADIVVKTSKLKKTVI--GGEV 306 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I +LIDE+P++A ++AFAEG TVI+D EL+ K+++RI T L GV+ + +DD M+ Sbjct: 307 IPTLIDEIPVIALLAAFAEGETVIKDAAELKVKESDRIALTVDNLVKMGVDATATDDGMI 366 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQF 424 I GG PL A +N DHRIAMT ++ + + ++I + C++VSYP F E L+ Sbjct: 367 IKGGNPLHGASINCKYDHRIAMTFSIAGINAEGETVIEDSECVDVSYPTFYEQLNSL 423 >A8RMM9.1 A8RMM9_9CLOT 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 426 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 175/419 (41%), Positives = 254/419 (60%), Gaps = 9/419 (2%) Query: 9 VPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQG 68 VPGDKSIS RA++ ++A+G ++N L+ D S I ++G+ I G ++ VHG+G Sbjct: 15 VPGDKSISHRAVMFGSVAQGLTEIHNFLQGADCLSTIACFEKMGIDIENKGGKVLVHGRG 74 Query: 69 LRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGAV 128 L GL AP L+ GN+ T+ RL+ +L GQ+F L G+ + RPM +++PL MGA Sbjct: 75 LHGLNAPREVLDCGNSGTTTRLISGILCGQNFDVTLTGDESICKRPMKRIMEPLAMMGAR 134 Query: 129 IEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRDH 188 I + GC PL I+G P+ I ++ V SAQ KSA++ AGLYA+ T + SR+H Sbjct: 135 ITSIKDNGCAPLLIKGG-PVHGIHYDSRVASAQVKSAIMLAGLYADSPTSVTEPYVSRNH 193 Query: 189 TERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGS-L 247 +E ++ FG + ++ +K N VMVPGD+SSAA+ +A G+ GS + Sbjct: 194 SELMLRLFGAQVSTEGTTAVIKPANELHGNQVMVPGDISSAAYFIAG----GLMVPGSQV 249 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 LI+ VG+NPTR G +R+ +MG H+ L +GEP ADI G+ +V+ G Sbjct: 250 LIRNVGINPTRDGILRVCRDMGAHIEL-LNVSGGTGEPTADILVRHGSLHGTVI--GGSV 306 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I +LIDE+P++AA++ FAEG TVIRD GEL+ K++NRI L A G + + ++D M+ Sbjct: 307 IPTLIDELPVIAAMACFAEGETVIRDAGELKVKESNRIAVMVQGLAAMGADVTETEDGMI 366 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQFAH 426 I GG PL A+++S DHRIAMT AV A D + IR+ C+N+SYPGF DL + A Sbjct: 367 IRGGAPLHGAVIDSRKDHRIAMTFAVTALCADGITEIRDADCVNISYPGFYSDLKKLAQ 425 >A5ZQ78.1 A5ZQ78_9FIRM 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 425 Score = 308 bits (789), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 169/415 (40%), Positives = 253/415 (60%), Gaps = 10/415 (2%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 +VPGDKSIS RA++ ++A+G + + L D S I+ R++G+ I E+ VHG+ Sbjct: 14 TVPGDKSISHRAVMFGSLAKGTTCISHFLEGADCLSTISCFRKMGISIECRKSEILVHGK 73 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GL GL AP L+VGN+ T+ RL+ +LAGQ F +EL G+ + RPM ++ PL MGA Sbjct: 74 GLHGLSAPEALLDVGNSGTTTRLISGILAGQKFISELDGDDSIRTRPMKRIMTPLASMGA 133 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 I GC+PL I G L + ++ V SAQ KS +L AG+YA+G+T + SR+ Sbjct: 134 DITSKRGNGCVPLLIHGKE-LHAVHYDSPVASAQVKSCVLLAGMYADGVTSVTEPFLSRN 192 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGS- 246 HTE +++YFG ++ S+ + + V VPGD+SSAA+ +AA G+ GS Sbjct: 193 HTEIMLNYFGANVTSEGTTASILPEPVLEGRAVKVPGDISSAAYFIAA----GLLTPGSE 248 Query: 247 LLIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNG 306 +L+K VG+NPTR+G +++ +MG +TL ++ GEP AD+ + L EG Sbjct: 249 ILLKNVGINPTRAGMLKVCMDMGADITLLNQST--EGEPTADLLIRT-SNLKGTTVEG-A 304 Query: 307 RIQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEM 366 I +LIDE+P++A ++AFA+G TVIRD EL+ K+++RI LK G + +DD M Sbjct: 305 VIPTLIDEIPMIAVMAAFADGTTVIRDAQELKVKESDRITVMVENLKRMGADIEGTDDGM 364 Query: 367 VIHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDL 421 +IHGG+PL A ++S DHR+AM+ AV + D+P I + C+ +SYP F +DL Sbjct: 365 IIHGGKPLHGATIDSHLDHRVAMSFAVAGTICDDPMEILHGDCVKISYPNFYQDL 419 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,497,780,602 Number of extensions: 102054597 Number of successful extensions: 231832 Number of sequences better than 1.0e-05: 1704 Number of HSP's gapped: 225851 Number of HSP's successfully gapped: 1725 Length of query: 433 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 294 Effective length of database: 1,751,175,118 Effective search space: 514845484692 Effective search space used: 514845484692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)