BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0036.p (733 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHB5.1 B1DHB5_9BACL Fibronectin type III domain protein 714 0.0 Q0B064.1 Q0B064_SYNWW Putative uncharacterized protein 420 e-115 B1D8T5.1 B1D8T5_9BACL S-layer domain protein 377 e-102 B8I5B9.1 B8I5B9_CLOCE Glycoside hydrolase family 10 343 5e-92 B1D969.1 B1D969_9BACL Cellulosome anchoring protein cohesin region 332 9e-89 >B1DHB5.1 B1DHB5_9BACL Fibronectin type III domain protein Length = 893 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/626 (59%), Positives = 466/626 (74%), Gaps = 19/626 (3%) Query: 109 PGVPLLQSAVFGNAQVQLIWTPVEGSTGYKIFQRLADTEY-GSEIATVSGSVYSYNAVNL 167 P P +AV GN QV L W+ V G+T Y I+ A +Y E+ATV+ S +YN +L Sbjct: 286 PANPQELNAVGGNRQVTLNWSTVAGATYYNIYMATASGQYTDDEVATVTAS--TYNVEDL 343 Query: 168 LNGTTYYFVVKAANAEGDSAASNELSATPKTAPGAPTNVTAVSGNGQAVVSFTAPDSDGG 227 +NGTTYYFVVKA NA G A SNE SATP AP APTNVTA +G+GQ ++FTAP DGG Sbjct: 344 VNGTTYYFVVKAGNAGGLGAKSNEASATPAIAPAAPTNVTATAGDGQVTLTFTAPADDGG 403 Query: 228 SPITGYEVISSPGNIVAYGTASPITVTGLTNGTAYTFTVKAINSAGSSTTSALSNTVTPI 287 SPIT YEV PGN+V GT+S I VTGL+NGT+YTFTVKAIN+AG S +SA SN P+ Sbjct: 404 SPITRYEVTVVPGNVVVSGTSSTIVVTGLSNGTSYTFTVKAINAAGVSVSSAESN---PV 460 Query: 288 APSSGGGDXXXXXXXXXXXXXXXXXXXXXXXGFNVLVNGKVENAGTITTATVNGQTALTV 347 P S +VL+NGKVENAGT TT+ N Q +T+ Sbjct: 461 VPKS-------------SSPTVPTTPNTVNNSVDVLINGKVENAGTATTSKRNDQNVITI 507 Query: 348 AIDQAKLEEKLAAEGQGAVVTIPVTVKSDIVIAELNGQMVKDMEDKQAVLELKSENATYT 407 ++DQ KLE+KLAAEGQGAV+TIPV KSDIVI ELNGQMVK ME+KQAV+ +K++ ATYT Sbjct: 508 SVDQKKLEDKLAAEGQGAVITIPVNSKSDIVIGELNGQMVKSMENKQAVVVIKTDQATYT 567 Query: 408 LPAGQINMDAIRSQFGTAAALGDIKVKLEIAAPAEDTLKTVENSAVQGGFTLVAPPLNFV 467 +PA QI + AI ++G +L DIKV++EIA+P DTLK VEN+A G FTLV PP+ F Sbjct: 568 IPAQQIQIGAIADKWGNTVSLQDIKVQIEIASPTADTLKVVENAAANGMFTLVVPPVGFT 627 Query: 468 VRAEYGGQTVEISKFSAYVERQIALPDGVDPNKITTAIVVEPNGSVRHVPTRVTTMDQKY 527 ++A YG +++EISKF+ YVER + +P GVDP+KITT +VVEP+G+VRHVPT++ +D Y Sbjct: 628 IKATYGNESIEISKFNVYVERTLPIPAGVDPSKITTGVVVEPDGTVRHVPTKIVLIDGMY 687 Query: 528 YAKVNSLTNSTYSIIWHPLEFKDVAGHWAKDIVNNMGSRMIIDGTGNGLFDPDADITRAE 587 YA++NSLTNSTYSI+WHPLEF DVA HWAK +N+MGSRM+I+GTG+GLF PD DITRAE Sbjct: 688 YAQINSLTNSTYSIVWHPLEFLDVANHWAKAAINDMGSRMVINGTGDGLFSPDRDITRAE 747 Query: 588 FAAVIVRGLGLKLDSSAASFADVKAGAWYSSAVQTAYAYHLINGFEDGTFRPADKITREQ 647 FAA++VRGLGLK ++ +++F+DV A W+SSA+ TAY Y LINGFEDGTFRP D+ITRE+ Sbjct: 748 FAAILVRGLGLKPENRSSAFSDVNASDWFSSAINTAYVYQLINGFEDGTFRPNDRITREE 807 Query: 648 AMAIIAKAMKLTSLKDKLPVQSSAELLSPFKDASKISQWAQSGAADSIEAGIVSGRSASE 707 AM ++++AM +T LK L QS A +L PF DAS +S WA GAADSI+AG+V+GRSA+E Sbjct: 808 AMTMLSRAMAITGLKATLSDQSEAAILYPFGDASNVSDWAIGGAADSIQAGLVTGRSAAE 867 Query: 708 LAPQAYITRAEVAAIVQRLLQKSNLI 733 LAP+A+ITRAEVA I+QRLLQ S LI Sbjct: 868 LAPKAFITRAEVATIIQRLLQASELI 893 >Q0B064.1 Q0B064_SYNWW Putative uncharacterized protein Length = 1260 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/409 (49%), Positives = 279/409 (68%), Gaps = 1/409 (0%) Query: 325 NGKVENAGTITTATVNGQTALTVAIDQAKLEEKLAAEGQGAVVTIPVTVKSDIVIAELNG 384 NGK E A T+TT +T TV I+ K+EEKLA EG AVVTIPV +D+VI LNG Sbjct: 851 NGKSETADTVTTTQEGDKTVTTVVINDKKVEEKLAREGNNAVVTIPVMSGADVVIGTLNG 910 Query: 385 QMVKDMEDKQAVLELKSENATYTLPAGQINMDAIRSQFGTAAALGDIKVKLEIAAPAEDT 444 VK+ME K AVLE+K+ TYTLPA QIN+DA+ QFG DI V ++I+ PA DT Sbjct: 911 HTVKNMESKNAVLEIKTGQLTYTLPASQINIDAVSGQFGKQVEFKDIAVSVKISKPAADT 970 Query: 445 LKTVENSAVQGGFTLVAPPLNFVVRAEYGGQTVEISKFSAYVERQIALPDGVDPNKITTA 504 +K VE++A + + ++ P+ F + G +TVE+SKFS YVER IA+P+GVDP+KITT Sbjct: 971 VKIVEDTADKSNYQIIVKPIEFEITCSSGSKTVEVSKFSTYVERMIAIPEGVDPSKITTG 1030 Query: 505 IVVEPNGSVRHVPTRVTTMDQKYYAKVNSLTNSTYSIIWHPLEFKDVAGHWAKDIVNNMG 564 +++ +G+ HVPT +T +D KYYAK+NSLTNS Y +I+ P FKDV HWA+ VN+M Sbjct: 1031 VILNSDGTFSHVPTVITMIDGKYYAKINSLTNSAYLLIYSPKTFKDVGKHWAEKDVNDMA 1090 Query: 565 SRMIIDGTGNGLFDPDADITRAEFAAVIVRGLGLKLDSSAASFADVKAGAWYSSAVQTAY 624 SR+II G GN LF+P+ +ITRAEF+AV+VR LGL+ + +F DVKAG WYS + + Sbjct: 1091 SRLIISGVGNDLFEPERNITRAEFSAVMVRALGLRPEEYKNNFFDVKAGEWYSEYISASS 1150 Query: 625 AYHLINGFEDGTFRPADKITREQAMAIIAKAMKLTSLKDKLPVQSSAELLSPFKDASKIS 684 Y L+ G++DG F+P ITR++AMAI+A+AM T L ++L + +S +L+ F D + +S Sbjct: 1151 YYGLVRGYDDGIFKPDGNITRQEAMAILARAMDTTKLGEELEIDAS-HILAAFNDNADVS 1209 Query: 685 QWAQSGAADSIEAGIVSGRSASELAPQAYITRAEVAAIVQRLLQKSNLI 733 WA+ A+ ++ G+V+GR +AP ITRAE +V+RLL S LI Sbjct: 1210 GWAKDSASKCVKTGVVTGRDNGRIAPLDNITRAETTIMVRRLLLNSGLI 1258 >B1D8T5.1 B1D8T5_9BACL S-layer domain protein Length = 835 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/417 (45%), Positives = 276/417 (66%), Gaps = 5/417 (1%) Query: 319 GFNVLVNGKVENAGTITTATVNGQTALTVAIDQAKLEEKLAAEGQGAVVTIPVTVKSDIV 378 G ++++GK G + ++T QT T+ + +L+E LA+ Q V +P+ +D+ Sbjct: 422 GSEIVIDGKSYRLGELKSSTRGEQTVSTLHLSTDQLKEILASSDQQVTVVLPIKTGADVS 481 Query: 379 IAELNGQMVKDMEDKQAVLELKSENATYTLPAGQINMDAIRSQFGTAAALGDIKVKLEIA 438 I E+ G +++ + KQA L +++E A Y LP G I++ + F ++ D+ V +EI Sbjct: 482 IGEIPGDLLQLLIQKQATLRIETEYAVYALPTGLIDLAKL---FNSSVNAKDVTVSVEIG 538 Query: 439 APAEDTLKTVENSAVQGGFTLVAPPLNFVVRAEYGGQTVEISKFSAYVERQIALPDGVDP 498 P + +A+Q L A P+ F + YG + VE++ F++YV+R IA+PD + Sbjct: 539 KPTAAMTALTQKAALQNQLNLAASPVQFSITISYGDKKVELTAFASYVKRMIAIPDNIAQ 598 Query: 499 NKITTAIVVEPNGSVRHVPTRVTTMDQKYYAKVNSLTNSTYSIIWHPLEFKDVAGHWAKD 558 N TAIVVEP+G+VR VPT++ T+D K YA ++SLTNS Y+++ + F D++ HW+K+ Sbjct: 599 NPGLTAIVVEPDGAVRPVPTKLVTIDGKRYALISSLTNSLYALVNKNVSFSDMSNHWSKN 658 Query: 559 IVNNMGSRMIIDGTGNGLFDPDADITRAEFAAVIVRGLGLKLDSSAASFADVKAGAWYSS 618 VN+M SR+I+ G G+GLF PD ITRAEFAA+IVR LGL++++ A+SF+DVKA AWYS Sbjct: 659 AVNDMASRLIVGGAGDGLFYPDKAITRAEFAAIIVRALGLRMENGASSFSDVKASAWYSD 718 Query: 619 AVQTAYAYHLINGFEDGTFRPADKITREQAMAIIAKAMKLTSLKDKLPVQSS--AELLSP 676 VQTAY++ LING+ DG F P D ITREQAM IIAKAM LT ++ + +Q S L++ Sbjct: 719 DVQTAYSHQLINGYPDGNFHPNDSITREQAMTIIAKAMTLTGIQTETDLQESNANALINV 778 Query: 677 FKDASKISQWAQSGAADSIEAGIVSGRSASELAPQAYITRAEVAAIVQRLLQKSNLI 733 F D SKIS WA SG A ++AGIVSG+SAS LAP A ITRAE ++QRLL KS+LI Sbjct: 779 FSDKSKISAWASSGIAACLQAGIVSGQSASILAPAANITRAEAVVMIQRLLSKSDLI 835 >B8I5B9.1 B8I5B9_CLOCE Glycoside hydrolase family 10 Length = 1495 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 178/411 (43%), Positives = 261/411 (63%), Gaps = 4/411 (0%) Query: 324 VNGKVENAGTITTATVNGQTALTVAIDQAKLEEKLAAEGQGAVVTIPVTVKSDIVIAELN 383 VNGK +G+ ++ +D K+ E L GQ +VV + + KSD+VI +LN Sbjct: 1088 VNGKEVPIAKAAIEYKDGKKVTSIVVDDTKVSELL---GQKSVVVLEPSTKSDVVIGQLN 1144 Query: 384 GQMVKDMEDKQAVLELKSENATYTLPAGQINMDAIRSQFGTAAALGDIKVKLEIAAPAED 443 Q +K+M DK+A+LE+K+EN +YT+PA +IN++ + S G L DIKV + I+ ++ Sbjct: 1145 AQTIKNMADKEAILEIKTENISYTMPASKINIEKVASALGNNIDLTDIKVNVSISGVSDS 1204 Query: 444 TLKTVENSAVQGGFTLVAPPLNFVVRAEYGGQTVEISKFSAYVERQIALPDGVDPNKITT 503 V++SA + + L + P+ F + G +TVEISKF+ Y+ER IA+PDGV+PN + T Sbjct: 1205 VNNIVKDSAEKNNYKLASTPVEFNLTCSNGTKTVEISKFNGYIERTIAIPDGVNPNGVIT 1264 Query: 504 AIVVEPNGSVRHVPTRVTTMDQKYYAKVNSLTNSTYSIIWHPLEFKDVAGHWAKDIVNNM 563 AIV+ +GS H+PT + D KYYAK+NSLTNSTY++I + FKDV HW+K+ V N+ Sbjct: 1265 AIVLNKDGSFSHIPTAIVLKDGKYYAKINSLTNSTYALISNTKTFKDVENHWSKNAVKNI 1324 Query: 564 GSRMIIDGTGNGLFDPDADITRAEFAAVIVRGLGL-KLDSSAASFADVKAGAWYSSAVQT 622 SR+I++G N F PD ITR EF IV+ +GL + D FADV + Y AV Sbjct: 1325 ASRLIMNGADNDSFVPDMAITRGEFIESIVKAIGLYRTDEGKDIFADVSSSNSYYDAVSI 1384 Query: 623 AYAYHLINGFEDGTFRPADKITREQAMAIIAKAMKLTSLKDKLPVQSSAELLSPFKDASK 682 A Y +I+G+ +G FRP ITR++AM I+AK MK+T LK A+ L FKD+ K Sbjct: 1385 ASEYGIISGYGNGEFRPMSTITRQEAMTIVAKTMKITGLKVDYTTDEIADSLIGFKDSDK 1444 Query: 683 ISQWAQSGAADSIEAGIVSGRSASELAPQAYITRAEVAAIVQRLLQKSNLI 733 ++ WA++ A ++AGIV+G+S + +AP+ ITRAE A+++ +LL SNLI Sbjct: 1445 LAVWARNSTAACVKAGIVAGKSLTVIAPEDNITRAETASVINKLLINSNLI 1495 >B1D969.1 B1D969_9BACL Cellulosome anchoring protein cohesin region Length = 611 Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 175/419 (41%), Positives = 263/419 (62%), Gaps = 16/419 (3%) Query: 322 VLVNGKVE-NAGTITTATVNGQTALTVAIDQAKLEEKLAAEGQGAVVTIPVTVKSDIVIA 380 V+V+GK + + T+++ VNG+ T+++D K+ E+L + Q +T+PV ++V+ Sbjct: 200 VIVDGKEQGESATLSSVVVNGRVVTTISVDNEKVAEQLQ-QNQIKTLTLPVEGSREVVVG 258 Query: 381 ELNGQMVKDMEDKQAVLELKSENATYTLPAGQINMDAIRSQFGTAAALGDIKVKLEIAAP 440 ELNGQ+VK ME++ A L +++ A+YTL A Q+N+D + Q G AL DIK+++ I+ Sbjct: 259 ELNGQLVKLMENRAASLVIQTNQASYTLSASQLNIDQVAGQLGAGTALQDIKIQVTISVM 318 Query: 441 AEDTLKTVENSAVQGGFTLVAPPLNFVVRAEYGGQTVEISKFSAYVERQIALPDGVDPNK 500 + ++VE +A L+A P+ F V A Y G++V I +FS YV R IA+PDGVDP+ Sbjct: 319 KDK--QSVEQAAANSEADLIATPVQFEVTASYRGKSVTIDRFSNYVNRTIAIPDGVDPSH 376 Query: 501 ITTAIVVEPNGSVRHVPTRVTTMDQKYYAKVNSLTNSTYSIIWHPLEFKDVAGHWAKDIV 560 ITT +V+ +G++ HVPT +T + YYA++NSLTNSTY+++WH F DV HWAK + Sbjct: 377 ITTGVVMAGDGTITHVPTVITQSEGHYYAQINSLTNSTYAVVWHSKTFADVTNHWAKADI 436 Query: 561 NNMGSRMIIDGTGNGLFDPDADITRAEFAAVIVRGLGLKL--DSSAASFADVKAGAWYSS 618 N++ SRM+I G F PD +TRAEF A+++R LG+ D + SF DV A AWY Sbjct: 437 NDLASRMVIQGVSADRFAPDRSVTRAEFTAILLRALGIHAPKDDTKVSFRDVGATAWYHD 496 Query: 619 AVQTAYAYHLINGFEDGTFRPADKITREQAMAIIAKAMKLTSLKDKLPVQSSAE----LL 674 AV A +Y LI G+ DG+F P I+R++A+ +I ++ +T L VQ+SA L+ Sbjct: 497 AVVNAVSYGLITGYSDGSFHPNASISRQEAIVMINRSSAITGL-----VQASASETAGLI 551 Query: 675 SPFKDASKISQWAQSGAADSIEAGIVSGRSASELAPQAYITRAEVAAIVQRLLQKSNLI 733 SPF D I WA + A + GIV G + +L P+ ITRAE A I++R+L + LI Sbjct: 552 SPFNDKKNIDSWALAAVASGAKQGIVKGTNG-KLLPKQPITRAESAVIMKRVLVAAGLI 609 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,880,172,139 Number of extensions: 156669513 Number of successful extensions: 514204 Number of sequences better than 1.0e-05: 1834 Number of HSP's gapped: 508115 Number of HSP's successfully gapped: 2581 Length of query: 733 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 590 Effective length of database: 1,713,491,058 Effective search space: 1010959724220 Effective search space used: 1010959724220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 135 (56.6 bits)