BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0033.p (384 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5U3.1 C0Z5U3_BREBN Putative uncharacterized protein 204 1e-50 A5D153.1 A5D153_PELTS Response regulator 82 7e-14 A7N541.1 A7N541_VIBHB Putative uncharacterized protein 81 2e-13 Q2C4L5.1 Q2C4L5_9GAMM Putative transcriptional regulator 80 4e-13 Q1ZVN2.1 Q1ZVN2_9VIBR Putative transcriptional regulator 80 4e-13 >C0Z5U3.1 C0Z5U3_BREBN Putative uncharacterized protein Length = 379 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 199/356 (55%), Gaps = 9/356 (2%) Query: 6 NNSEYKVMADGITITLLPKEFALLQFLYRNVGRTFSREQLLDHVWPLEYPVERTVDDHIY 65 ++ Y++ G TI LLPKE+AL Q+LY R FSR LLD VWPLE P +RTVDDHIY Sbjct: 7 SDDSYQIHYAGETIVLLPKEYALFQYLYTWKNRAFSRSDLLDRVWPLEEPTDRTVDDHIY 66 Query: 66 RLRKKLHVLSG-LDIKTVRGFGYSLAVPGTPAGVALNPAMNDPELRETMRSVFSKFHVYG 124 RLRKKL S L I TVRG GY L + P+ +P++ + E ++ + + +H G Sbjct: 67 RLRKKLQKWSHLLTIDTVRGVGYRLTLKEQPSP---SPSVLTSDFSENIQRMLTTYHGMG 123 Query: 125 QGKSMVTLARQQDILGYELDSVYSMVIHFVQGDLEWLLHTDEVPLKERLFYLMIFYFLSG 184 G ++ TL Q +LG+++DS Y+ + FV GD W + D+ PL ++LFYL Y ++ Sbjct: 124 MGAALQTLYANQQVLGFQMDSFYATYLRFVGGDFGWFVE-DKPPLSDKLFYLFHLYRMTE 182 Query: 185 -DPKERLAYCEQVIELKLVYP-NYQLELEILTILDLFTLAGQPERALERLKRSHQVIAEL 242 D ++ L + ++ P NYQ E++I I ++ A + ERA ++L + +V+ + Sbjct: 183 IDSQKTLEILQWALKNAKSMPKNYQDEMQITAIC-VYAQAKEWERAKKQLLPAREVVERV 241 Query: 243 GYDNFIPVTLITELFVHLTAGTGDEELKRMDEAIGVILQEKPFLREIGSYKVVKGLWSLR 302 F E ++L G EE +++ + ILQE P RE+GS+ + +GL Sbjct: 242 NSPGFQLFFQAEEALLYLLMGEV-EEAEKVIQRSEEILQELPMQRELGSFTITRGLCLYH 300 Query: 303 LEQWREAENLLSEGLQVLEMSGFIPLRLYSLYRIVHFCRMFPPPKALQHKYEEIFV 358 ++ +A L+ EGL+VL + F+P +Y I+ F + F + + KY++I+ Sbjct: 301 RQELAKARRLVDEGLEVLRSTKFVPHLIYGAKMILSFLKDFGYDREWERKYQKIWT 356 >A5D153.1 A5D153_PELTS Response regulator Length = 239 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 3/91 (3%) Query: 2 HLELNNSEYKVMADGITITLLPKEFALLQFLYRNVGRTFSREQLLDHVWPLEYPVE-RTV 60 L ++ ++ V DG+ + L PKEF LL+FL R GR FSREQLL+ VW +Y + RTV Sbjct: 142 RLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFSREQLLEQVWGYDYAGDSRTV 201 Query: 61 DDHIYRLRKKLHVLSGLD--IKTVRGFGYSL 89 D HI +R+KL LS D I+TVRG GY Sbjct: 202 DVHIRHIRQKLGRLSESDQPIETVRGVGYCF 232 >A7N541.1 A7N541_VIBHB Putative uncharacterized protein Length = 220 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%) Query: 3 LELNNSEYKVMADGITITLLPKEFALLQFLYRNVGRTFSREQLLDHVWPLE-YPVERTVD 61 LE++ + +V+ G ITL EF LL FL N+GR F+R++LLDHVW +P RTVD Sbjct: 134 LEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDELLDHVWGYNHFPTTRTVD 193 Query: 62 DHIYRLRKKLHVLSGLDIKTVRGFGYSLAV 91 H+ +LR+K L GL+I+T+RG GY + V Sbjct: 194 THVLQLRQK---LPGLEIETLRGVGYKMKV 220 >Q2C4L5.1 Q2C4L5_9GAMM Putative transcriptional regulator Length = 219 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 4/86 (4%) Query: 5 LNNSEYKVMADGITITLLPKEFALLQFLYRNVGRTFSREQLLDHVWPLE-YPVERTVDDH 63 +N +V+ D ITL EF LL FL +N GR F+R++LLD VW YP RTVD H Sbjct: 135 INQESREVIFDNENITLTRTEFELLVFLSKNAGRVFTRDELLDQVWGYNHYPTTRTVDTH 194 Query: 64 IYRLRKKLHVLSGLDIKTVRGFGYSL 89 I +LR+K L G+DI+T+RG GY + Sbjct: 195 ILQLRQK---LPGIDIETLRGVGYRM 217 >Q1ZVN2.1 Q1ZVN2_9VIBR Putative transcriptional regulator Length = 219 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 4/86 (4%) Query: 5 LNNSEYKVMADGITITLLPKEFALLQFLYRNVGRTFSREQLLDHVWPLE-YPVERTVDDH 63 +N +V+ D ITL EF LL FL +N GR F+R++LLD VW YP RTVD H Sbjct: 135 INQESREVIFDNENITLTRTEFELLVFLSKNAGRVFTRDELLDQVWGYNHYPTTRTVDTH 194 Query: 64 IYRLRKKLHVLSGLDIKTVRGFGYSL 89 I +LR+K L G+DI+T+RG GY + Sbjct: 195 ILQLRQK---LPGIDIETLRGVGYRM 217 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,334,567,283 Number of extensions: 99905339 Number of successful extensions: 235087 Number of sequences better than 1.0e-05: 3582 Number of HSP's gapped: 238397 Number of HSP's successfully gapped: 3582 Length of query: 384 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 247 Effective length of database: 1,770,017,148 Effective search space: 437194235556 Effective search space used: 437194235556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)