BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0030.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3AMD1.1 C3AMD1_BACMY Phosphoglycerate mutase 197 3e-49 C2PIQ4.1 C2PIQ4_BACCE Phosphoglycerate mutase 197 3e-49 C3B4V4.1 C3B4V4_BACMY Phosphoglycerate mutase 196 8e-49 C0Z5J7.1 C0Z5J7_BREBN Putative uncharacterized protein 196 1e-48 C2YTF4.1 C2YTF4_BACCE Phosphoglycerate mutase 194 3e-48 >C3AMD1.1 C3AMD1_BACMY Phosphoglycerate mutase Length = 190 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 96/186 (51%), Positives = 133/186 (71%), Gaps = 1/186 (0%) Query: 5 TYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIAG 64 T+IYMVRHG+S KT NER+R L+ +G+ D R+T L GEGI+ SSPY R++ TI Sbjct: 3 TFIYMVRHGESPKTEENERTRGLTEKGKLDTYRITDILQGEGIEVFVSSPYHRSILTIQE 62 Query: 65 LAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKER 124 LA LG+E+ EDLKE+ ++ +D+ + D EL P L++ F++P+F L+ GGESN VC+ R Sbjct: 63 LAKRLGQEVLVFEDLKERVFSAEDKRISDKELLPLLKKSFSDPNFALK-GGESNAVCQNR 121 Query: 125 AVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGLL 184 A+K LKE+L+ + G+++V+GTHG VMTLMM + +Y L+FLL T KPDIYRME D L Sbjct: 122 AIKVLKELLKTYRGQKVVLGTHGAVMTLMMGYYDNQYDLNFLLHTSKPDIYRMEFHDQEL 181 Query: 185 SHVQRM 190 V R+ Sbjct: 182 VEVNRL 187 >C2PIQ4.1 C2PIQ4_BACCE Phosphoglycerate mutase Length = 191 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/187 (52%), Positives = 131/187 (70%), Gaps = 1/187 (0%) Query: 4 TTYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIA 63 TYIYMVRHG+S K G+ER+R L+ +G DA RVT L EGID SSPY RAV TI Sbjct: 2 NTYIYMVRHGESSKLEGSERTRGLTEKGSLDAHRVTDILKTEGIDTFISSPYKRAVLTIE 61 Query: 64 GLAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKE 123 A GKEI E+LKE ++ D+ + D E+YP +++MF+ PDF+L + GES + C+ Sbjct: 62 KTANFYGKEILIYENLKECMFSSGDQVISDKEVYPLVKKMFSNPDFILME-GESYKDCQR 120 Query: 124 RAVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGL 183 R VK LKEIL + G++IVIGTHG+VMTLMMN F ++YG +FL+ T KPDIY++E D Sbjct: 121 RVVKVLKEILMDFQGQKIVIGTHGLVMTLMMNYFDKQYGFEFLIHTSKPDIYKLEFNDEK 180 Query: 184 LSHVQRM 190 L +V+++ Sbjct: 181 LLNVEKL 187 >C3B4V4.1 C3B4V4_BACMY Phosphoglycerate mutase Length = 190 Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 95/186 (51%), Positives = 133/186 (71%), Gaps = 1/186 (0%) Query: 5 TYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIAG 64 T+IYMVRHG+S KT NER+R L+ +G+ D R+T L G+GI+ SSPY R++ TI Sbjct: 3 TFIYMVRHGESPKTEENERTRGLTEKGKLDTYRITDILQGKGIEVFVSSPYHRSILTIQE 62 Query: 65 LAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKER 124 LA LG+E+ EDLKE+ ++ +D+ + D EL P L++ F++P+F L+ GGESN VC+ R Sbjct: 63 LAKRLGQEVLVFEDLKERVFSAEDKRISDKELLPLLKKSFSDPNFALK-GGESNAVCQNR 121 Query: 125 AVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGLL 184 A+K LKE+L+ + G+++V+GTHG VMTLMM + +Y L+FLL T KPDIYRME D L Sbjct: 122 AIKVLKELLKTYRGQKVVLGTHGAVMTLMMGYYDNQYDLNFLLHTSKPDIYRMEFHDQEL 181 Query: 185 SHVQRM 190 V R+ Sbjct: 182 VEVNRL 187 >C0Z5J7.1 C0Z5J7_BREBN Putative uncharacterized protein Length = 190 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/186 (52%), Positives = 128/186 (68%), Gaps = 1/186 (0%) Query: 5 TYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIAG 64 TYIYMVRHG+S KT G+ER+R L+ +G DA+ +TQ L EGID SSPY RAV TI Sbjct: 3 TYIYMVRHGESPKTEGDERTRGLTEKGRSDARIITQLLKEEGIDVFISSPYKRAVATIEE 62 Query: 65 LAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKER 124 LA ++GKEI E+L+E + D++ + D ELYP +++MF EPDF L GGES VC+ R Sbjct: 63 LAQSVGKEIVVFEELRELVFIGDNQIMADNELYPLVKKMFTEPDFSL-PGGESITVCRNR 121 Query: 125 AVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGLL 184 V + IL + G+++ IGTHG VMTLMM F +Y LDFLL T KPDIY+ME +D +L Sbjct: 122 VVGTFRNILEQYRGQKVAIGTHGAVMTLMMGYFDSQYDLDFLLTTSKPDIYKMEFQDEVL 181 Query: 185 SHVQRM 190 +R+ Sbjct: 182 VETKRL 187 >C2YTF4.1 C2YTF4_BACCE Phosphoglycerate mutase Length = 198 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/186 (51%), Positives = 132/186 (70%), Gaps = 2/186 (1%) Query: 5 TYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIAG 64 T+IYMVRHGDS K SG E++R L+ +G+ D QR+T L GEGID + SSPY R++ T+ Sbjct: 7 TFIYMVRHGDSPK-SGKEKTRGLTEKGKLDVQRITDVLQGEGIDIVISSPYNRSILTVQQ 65 Query: 65 LAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKER 124 LA +G+E+ EDLKE+ + ++ + D EL+P + + F EPDF L GGESN C++R Sbjct: 66 LAKQIGQEVLVFEDLKERIFIAEEERMSDKELFPLITKSFLEPDFAL-TGGESNVDCQKR 124 Query: 125 AVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGLL 184 A+K LKE+L + G+++V+GTHG VMTLMM + +YGL+FLLQT KPDIYRME L Sbjct: 125 AIKVLKELLNTYRGQKVVLGTHGAVMTLMMGYYDSKYGLNFLLQTSKPDIYRMEFNGQEL 184 Query: 185 SHVQRM 190 ++R+ Sbjct: 185 VEIKRL 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,147,243,221 Number of extensions: 45890383 Number of successful extensions: 131078 Number of sequences better than 1.0e-05: 503 Number of HSP's gapped: 130982 Number of HSP's successfully gapped: 503 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)